| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1246 |
|---|
| Symbol | |
|---|
| ID | 7310041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 1540543 |
|---|
| End bp | 1542225 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643608167 |
|---|
| Product | Pectinesterase |
|---|
| Protein accession | YP_002505582 |
|---|
| Protein GI | 220928673 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4677] Pectin methylesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGG AAAGATTTTT TCAGCTAGCT TTGATTTTTG TCTTTGTGTT TCAAACCATA
GTTGGCTCAT TTTTAATGTC TAAAGTGGGA GCGGTGTCCT ATGATTTGAT TGTAGCAAAG
GACGGAAGCG GTAATTATAC TACGGTACAG GCAGCTATAA ACAGTGCACC TTCCAATAGC
CAAACCAGAA CAAAAATATA CATTAAAAAC GGAACATATA AAGAAAAAAT AAATATTTCG
TCGTCTAAAA TAAATATTTC ATTGATTGGA CAAAGTAAGG CAGGCACGAT TTTAACCTAT
AATGATGCAG CGAGTACAAA AACATCTTCG GGCGGAACAT TAGGTACGAC GGGAAGTGCC
AGTGTTACCA TTGCAGGTAA TGGTTTTCAG GCGGAAAACA TTACTTTTGA AAATTCATAT
GATGAAAAAG CTTATGGCAA CAGTCAGGCT GTAGCTGTTC TTGCTAAAGC AGACAAAATG
ATATTTAAAG GCTGTTCATT CAAGGGTAAT CAGGATACAC TATATGCAAA CGGAGATGCT
CGCAGGCAAT ACTACTATAA CTGCTATATT GAGGGAGATG TGGATTTCAT TTTTGGATCT
GCAAATGCGG TATTTGATAG TTGTGAAATT TTTTCTCTCA ACAGAAGCGG AGGGTGTATA
ACGGCACCCA GCACCAAGGC AAATCAAAAG GGATATCTTA TATACAAGTG CAAGCTGACA
AGTAGCTCAA GTCCCAAAAC TATTTATCTA GGAAGACCCT GGATTCCCAG TTCCGATACT
GTTCAGACAA CGCCAAAGGT ATTATATAGG GAGTGTGAAC TAGGCTCTCA TATTACTGAT
ACAGGTTGGA CTGTCATGTC GGGCAATGAT CCTGCAAATT TTGAAATGTG GGAATATAAT
AATACAGGCA CAGGTGCGAA TACATATAGA AAGCAGCTTC CGTCAGTGAA GGCAGCCGAT
TACACAATAG AGAAATTTCT TTCAGGGTCT GACGGTTGGA ATCCGAATAT AGATAGTAAT
ACTCCTGTAC CGATTCCTGA CGGGCAATAC ATAAAGTCAC TGGTTATAAA CGATACCGTA
AATGCCGTAA ACTGGTCTGT TCAGTCAAAT TTACAAGTCG GAGACATAAT TTACGGTGAT
AGGACATATA AATTCACACA GGTTCCACAA AAGCTTCTGG GTTCAGAGTG GATAAAGACA
GCATGTAATT CCAAAATTTA TACATCTGAC TTGGCGTCTT TTACTGCAAA ATCGGATGTA
ACTGTTTATA TTGGCCTGGA CACCAGAGTA ACAAGTATTC CCGGCTGGCT GAGCAGCTGG
ACTGATACGG GTGAATCATT AGTAAGTGAT AATAGTTCAG TTGCGTACAA CATATACAAA
AAGGATTTCA TGGCATATTC TCTTGTAACA CTTGGCACCA ACGGTGCATC CTCAAGTACT
GTCAACTACG CGGTTATTGT TAAGTCAAAT ACGTATGATT TCCTTTTAGG TGATGCAAAT
GGTGATGGGG AGGTAAACTC TCTTGATTAT GCCACTCTTA AGTCATATCT ACTGGGAAAG
ATAAGTTTAT CGCAGGAAGC CATGAAGACG GTAGATTTTA ATAATGATAA TACAATAGAT
GCTATTGATT TGGCTTTGTT CAGAATAAAT CTTTTAGGCG GGCCTATATA TAACATGCTG
TAA
|
|---|
| Protein sequence | MKRERFFQLA LIFVFVFQTI VGSFLMSKVG AVSYDLIVAK DGSGNYTTVQ AAINSAPSNS
QTRTKIYIKN GTYKEKINIS SSKINISLIG QSKAGTILTY NDAASTKTSS GGTLGTTGSA
SVTIAGNGFQ AENITFENSY DEKAYGNSQA VAVLAKADKM IFKGCSFKGN QDTLYANGDA
RRQYYYNCYI EGDVDFIFGS ANAVFDSCEI FSLNRSGGCI TAPSTKANQK GYLIYKCKLT
SSSSPKTIYL GRPWIPSSDT VQTTPKVLYR ECELGSHITD TGWTVMSGND PANFEMWEYN
NTGTGANTYR KQLPSVKAAD YTIEKFLSGS DGWNPNIDSN TPVPIPDGQY IKSLVINDTV
NAVNWSVQSN LQVGDIIYGD RTYKFTQVPQ KLLGSEWIKT ACNSKIYTSD LASFTAKSDV
TVYIGLDTRV TSIPGWLSSW TDTGESLVSD NSSVAYNIYK KDFMAYSLVT LGTNGASSST
VNYAVIVKSN TYDFLLGDAN GDGEVNSLDY ATLKSYLLGK ISLSQEAMKT VDFNNDNTID
AIDLALFRIN LLGGPIYNML
|
|---|
| |