| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1054 |
|---|
| Symbol | |
|---|
| ID | 7312180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 1311643 |
|---|
| End bp | 1312578 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 643607979 |
|---|
| Product | dihydrouridine synthase DuS |
|---|
| Protein accession | YP_002505394 |
|---|
| Protein GI | 220928485 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTT ATTTTGCACC AATGGAGGGA TTGACGGGTT ATATTTATAG AAATGCACAT
AATGCTTTCT TTAATAGCAT AGACAAATAC TTTTCTCCTT TTATTATTGC AAATCAAATA
GATGGTTTCA AGACCAGAGA CCTGAAAGAT ATTTCGCCTG AAAATAATCA GGAGCTGGTT
TTGATTCCAC AAGTGCTTAC AAATAATGCA AAAGACTTTA TTTATACTTC AAAGAAAATT
AAGAGTATGG GTTATACTGA GATAAATCTT AATCTGGGAT GTCCTTCCGG GACTGTAGTC
TCCAAAAACA GGGGCTCCGG ATTTCTTGCA AAAAAAGAGG AGCTTGATGT TTTTTTGGAG
GAAATTTTTT CTCAAGCTAT AACTAAAATA TCAATTAAAA CCAGAATAGG CAAAGATCAG
CCTGAAGAAT TTTATGATTT AATACGGATA TTTAACAAAT ACCCTATAAA TGAGCTTATT
ATACACCCTA GAATTCAAAA GGATTTTTAT AAAAATAAGC CCAATATGAA AATTTTCAGG
GATGCCTTGG CTGAAAGTAA AAATCCTGTC TGTTACAATG GTGACATTTT TACAGCAAAG
GACTATAAAG AGTTTTGTAA TGATTTTCCC GGTGTAGATA CTCTGATGTT AGGCAGAGGA
TTATTAATGA ACCCTGCATT AGCAGGGTAT GTTAAAAATG GTAGAAAATT GGAAAAAAGT
TTATTAAAGA AGTTCCACGA CAAAGTATAT AATGATTATA AAGACATTCT TTCCGGGGAA
CGCAATGTCC TGTTTAAAAT GAAAGAGCTG TGGTTTTATA TGATAAATGT TTTTACCGAC
AATGAAAAAT ACGCCAAGAA AATTAAGAAG TCACAAAGAT TATCTGATTA TGATGAAGCT
ATATCCAGAC TGTTTGAGGA ACAGGAGATT GTTTAA
|
|---|
| Protein sequence | MKFYFAPMEG LTGYIYRNAH NAFFNSIDKY FSPFIIANQI DGFKTRDLKD ISPENNQELV
LIPQVLTNNA KDFIYTSKKI KSMGYTEINL NLGCPSGTVV SKNRGSGFLA KKEELDVFLE
EIFSQAITKI SIKTRIGKDQ PEEFYDLIRI FNKYPINELI IHPRIQKDFY KNKPNMKIFR
DALAESKNPV CYNGDIFTAK DYKEFCNDFP GVDTLMLGRG LLMNPALAGY VKNGRKLEKS
LLKKFHDKVY NDYKDILSGE RNVLFKMKEL WFYMINVFTD NEKYAKKIKK SQRLSDYDEA
ISRLFEEQEI V
|
|---|
| |