| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1039 |
|---|
| Symbol | |
|---|
| ID | 7309861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 1294109 |
|---|
| End bp | 1295347 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 643607966 |
|---|
| Product | Pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_002505381 |
|---|
| Protein GI | 220928472 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATC AGAGATGGAA TTTTCCCAGA AATGGGTTGA GCATGGACCA AATTAAGGAA
TATATGAACC CTGGCAGAAA TTATGATTGC TTAGACAATG GCAAGGTGTT TCTCGGATAT
CCGCAGACTA CTCCCCACCC TATTGCTATT AAGACGTACA AGAATTATCT GCAATATAAC
GATAACCATG TGGGGACATT TAGTAACAAT AACACTGACT TGAATATATC CAGAAAAATG
GAGAAACAGT TTATCGAAAT GTTAGGTGAT TTGTATGGAG ATATTGAAGC AGATGGTTAT
GTTACATCAG GGGGTACAGA GGGTAATATT ATGGGAATAT GGGTAGGAAA ATATTACCTT
GGCGGAGGGG AGACAGATAA CCTTTGCCTG ATAAAAACAT ACCTTACACA TCAATCAATT
GATAAGGCTT GCAGCTTAAA CAATATTACA AACATAATTG AAATTCCATA TAACCAAAAT
TTTGAGATGG ATACCAATTT ACTTAGAAAT GAAATTGATT TTCAGATTGA ATCCGGTAAA
AACAGAATTA TAATTGTTGC TACAGTAGGC TATACAATGA CGGGGACAAG TGATCCCATT
GATGAGATTG ATAAAATAAT ACAGGATTAT TCCAGAAATA AAGATGTCAG TTTTTATCTT
CACGTTGATG CAGCTATTGG AGGGCTTGTA TATCCGTTTT GCAAAAAGGA AGATTTTGCA
TTCCAATATC CTAGTGTTAA GTCTTTAACT GTTGATCCTC ATAAAATGGG ATATGTACCT
TTTTCAGCCG GTGTTTTCCT TTGCAGACGC AATTTGCAGG ATTGTGTTGC AATCCCTATA
AAGTATGCAA AAACCGTTAT GGATAAAACA TTGGTCAGTT CAAGAAGTGC GGCAGCAGCA
GCAGCATGCT GGACAACCTT CAACTATTTG GGCATAGCGG GATTTGAAAA AAAAATAAAA
AAGCTTATTT CTATCAAGGA GTATTTAGTT GAAAAAGTCT TGGCTGATAA ATTGGCTGTA
TTAATTTCCG ATCCGGGGAC TAATATGGTA TGCCTGTACT TTGATTCTCT TGCTCAGGGA
TTACTGCCTG AATGGATTGA AAAAAAGTAT ACCTTGGACG GATTTTTGTT GAAATGTAAA
GACGAAATGA TTATATGCTA CAAGGTATAT ATCATGCCTC ATGTTACTAA AAGAGCTATT
CTTCAGTTTG TTGATGACAT TCGAGCGTTA GCCTGCTAA
|
|---|
| Protein sequence | MEDQRWNFPR NGLSMDQIKE YMNPGRNYDC LDNGKVFLGY PQTTPHPIAI KTYKNYLQYN
DNHVGTFSNN NTDLNISRKM EKQFIEMLGD LYGDIEADGY VTSGGTEGNI MGIWVGKYYL
GGGETDNLCL IKTYLTHQSI DKACSLNNIT NIIEIPYNQN FEMDTNLLRN EIDFQIESGK
NRIIIVATVG YTMTGTSDPI DEIDKIIQDY SRNKDVSFYL HVDAAIGGLV YPFCKKEDFA
FQYPSVKSLT VDPHKMGYVP FSAGVFLCRR NLQDCVAIPI KYAKTVMDKT LVSSRSAAAA
AACWTTFNYL GIAGFEKKIK KLISIKEYLV EKVLADKLAV LISDPGTNMV CLYFDSLAQG
LLPEWIEKKY TLDGFLLKCK DEMIICYKVY IMPHVTKRAI LQFVDDIRAL AC
|
|---|
| |