| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1032 |
|---|
| Symbol | |
|---|
| ID | 7309854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 1284805 |
|---|
| End bp | 1285509 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643607959 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002505374 |
|---|
| Protein GI | 220928465 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00144491 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TTCTGATTAC AGGAGTGTCG GGTGGGCTTG GTACATGCTT GGCAAACGAC
TTTATTAAGA AAAATTATTA CGTTTATGGG TATGATAAAA CCTATAATGA AAAAATAAGT
GTTTTGGAAA CTGATTATCC AAATCAATTT AAATTTTTCA ATACAGATGT AAGTTTAGAC
AGTGCAGTTG AGGAAACCGC CAAAAAAATT AAACAGAACA GTGACACGTT GGATATATTA
ATTAATGCTG CTGCAATACT CCCGACTAAT AGTGCGAATA TCTTAGAAGA CTTTGAAATA
TCACAGTCAT TGGAGGTTTT CTCTACTAAT TCACTTGGGC CTTTGAGGGT TGTAAAGAGT
CTTTTACCGT TGATAAGGAA GGGTGAGGAT AAATTAATAA TAAATATATC ATCCGAAGCA
GGCAGCCTGG CTACACACTG TAATTATGTA AATAGATATG ATTATTGCAT GTCAAAAGCA
GCATTAAATA TGCAAAGTGT TATTCTGCAG CGTTATCTGA AACCCGATGG AATTAAAGTT
CTGGCAGTTC ATCCGGGTTG GGTAAGAACT GAGATGGGCG GTCTGGACGC CCCGATTCTA
CCATCGGAAT CGGCGGCAGG CATAGTAACA CTTGCAGAAA AGTATATACA CAAAACAGGT
GAAGGTATAT TTTTTGACTA CGATGGAAAT ACAAGGGAAT GGTGA
|
|---|
| Protein sequence | MKKVLITGVS GGLGTCLAND FIKKNYYVYG YDKTYNEKIS VLETDYPNQF KFFNTDVSLD
SAVEETAKKI KQNSDTLDIL INAAAILPTN SANILEDFEI SQSLEVFSTN SLGPLRVVKS
LLPLIRKGED KLIINISSEA GSLATHCNYV NRYDYCMSKA ALNMQSVILQ RYLKPDGIKV
LAVHPGWVRT EMGGLDAPIL PSESAAGIVT LAEKYIHKTG EGIFFDYDGN TREW
|
|---|
| |