| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_6591 |
|---|
| Symbol | |
|---|
| ID | 7308431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011894 |
|---|
| Strand | - |
|---|
| Start bp | 6676996 |
|---|
| End bp | 6678726 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 643604162 |
|---|
| Product | RNA-binding S4 domain protein |
|---|
| Protein accession | YP_002501663 |
|---|
| Protein GI | 220926361 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.351846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACA GCAACGACCA CGAGCCCCGC GGGCCCAGGC GCCGCCGCGG GACGGGCGAG
CCTGACCCGG CTCCGGCTCC CGCACCGGCC CCTTCCGAGC CCGAGCGCAT CGCCAAGGTC
ATCGCGCGGG CGGGCATCGC CTCGCGGCGC GACGCGGAGG CGATGATCCT GGAGGGACGG
GTGACCCTGA ACGGCGAGAC CCTGACCTCT CCGGCCGTGA ATGTCGGCCC CAACGACCGG
ATCACCGTCG ACGGCGAGCC CCTGCCCGTC CGCGAGCGCA CGCGGCTGTG GATCTTCCAC
AAGCCGCGGG GCGTGGTGAC GACGGCCCGC GACCCGGAGG GCCGCCAGAC CGTGTTCGAG
ATCCTGCCCG AGGATCTGCC GCGGGTGGTG GCGGTCGGCC GGCTCGACAT CAACACCGAG
GGGCTCCTGC TCCTCACCAA TGACGGCGGC CTCGCCAAGG TCATCGCCCA TCCGGAGACC
GGCTGGCTGC GCCGCTACCG GGTGCGGGCC TATGGCGACA TCGACCAGGC GCAGCTCGAC
CGGCTGCGCG ACGGCGTCAC CATCGACGGC ATGGAGTACG GCCCGATCGA GGCCTCCATC
GACCGGCAGC AGGGCGACAA CGTCTGGCTG ACGCTCGGCC TGCGCGAGGG GAAGAACCGC
GAGGTCAAGC GGATCCTGGA GCATCTCGGC CTCTCGGTGA ACCGGCTGAT CCGGCTCTCC
TTCGGGCCGT TCCAGCTCGG CGATCTGGAG GTCGGGCTGG TCGAGGAGGT GCGCACCAAG
GTGCTGAAGG AGCAGCTCGG CACTGCGCTC GCCGAGCAGG CGGGCGTCGA CTTCACGAGC
CCGGTACGCG AGCCGATCGC GCCCTTCGGC TCGCCGAAGG GCGCCAGGAA GACGGCGGCC
GCGACCGCCC AGGCCCCGCA GGGGCGCGGC GAGGGGCGGC CTGCCCGCGG CGAGCGCCCG
GCGTGGGGCG AGCGACCGAT GTGGGGCGAG CGCCCCGCCA GGGGCGGACG CGATCCCGCG
CGGCCGCAAT TCGGGCGGGC GCCCGGTCCG GGCACGCGGC CCGAACGGAG CCGGACGCCG
GAGGCCGGCC CGGCGCCGCG CCGGATGGTG TGGCGCGATC CGGAGGCCGA GGCCGCAAGC
GAGGCGCGGC CGCGGGTGCG GCGGCGCAGC AGCGATCCCA AGGAGGCCCG GGCCGCGGCG
GCCGAGCGCC CGCGCGAGCG GGTCGGCGCC ATCGCGTCGG GCGAGCGCCG GGTAGTGGTC
GAGCGGCTCG TGGCGGAGCC CGCCCCCGAG CCGAGCCGGC CCCCTCGGCC GGAAGGCCGG
CTTCGGCCCG AAGGTCGGCC CCGGCCCGAA GGTCGGCACC GGCCGGAAGG CCGACAGGAG
GGCGAGCGGC CCGCGCGGGC GGAGCGCCCC GACCGGGCAC CCCGCGCCCG CGAGGAGCGC
CCGGCGCGGC GTCCGTACGC CGAGGGGGCG GCGCCCGAGC GGCGCGGCCC GAAGGGCGGC
TTCGGAGGCG GCCCGCCGGG CTCCGGCAAG GGCGGTTTCG GCAAGGGCGG CTTTGCCAAG
AGCGGCGGCC GGTCCGGCCC GGGCAAGCCG GCCGGCAAGG GCGGAGCCCG GCCGGGCGGC
GCTCCGGGCG GGCGGGGCCG CGCGGGTCCG TCCGCGGGGG CCGGCCGTCC GGGCGGCGGA
CCGCCGCGTG GAGGGCCGCC GCGCGGGGGG CGCCCGCCAC GCGGGCACTG A
|
|---|
| Protein sequence | MSDSNDHEPR GPRRRRGTGE PDPAPAPAPA PSEPERIAKV IARAGIASRR DAEAMILEGR
VTLNGETLTS PAVNVGPNDR ITVDGEPLPV RERTRLWIFH KPRGVVTTAR DPEGRQTVFE
ILPEDLPRVV AVGRLDINTE GLLLLTNDGG LAKVIAHPET GWLRRYRVRA YGDIDQAQLD
RLRDGVTIDG MEYGPIEASI DRQQGDNVWL TLGLREGKNR EVKRILEHLG LSVNRLIRLS
FGPFQLGDLE VGLVEEVRTK VLKEQLGTAL AEQAGVDFTS PVREPIAPFG SPKGARKTAA
ATAQAPQGRG EGRPARGERP AWGERPMWGE RPARGGRDPA RPQFGRAPGP GTRPERSRTP
EAGPAPRRMV WRDPEAEAAS EARPRVRRRS SDPKEARAAA AERPRERVGA IASGERRVVV
ERLVAEPAPE PSRPPRPEGR LRPEGRPRPE GRHRPEGRQE GERPARAERP DRAPRAREER
PARRPYAEGA APERRGPKGG FGGGPPGSGK GGFGKGGFAK SGGRSGPGKP AGKGGARPGG
APGGRGRAGP SAGAGRPGGG PPRGGPPRGG RPPRGH
|
|---|
| |