| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_8213 |
|---|
| Symbol | |
|---|
| ID | 7295428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011887 |
|---|
| Strand | + |
|---|
| Start bp | 422198 |
|---|
| End bp | 423376 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643592721 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002490353 |
|---|
| Protein GI | 220915045 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0720948 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAGA TTTATGTATT GACGTCATCA TTAGCCTTGC TAGCGCTGAC AACATCAGCT
GTTCAAGCTT TGGATGCGGC TGGCTATCTC AACCGGGGGA TCACCTACTA CGGTAATCGT
GAGTACGAGC AGGCAATAGC GGACTACAAT GAAGCTATTC GGATCGAACC CGGTCTCGCG
CTGGCCTACT TGGGACGTGG AAGCGTGTAT GAAAGTAGGC GTGAGTACGA TCAGGCAATG
GCTGACTACA ATAAAGCTAT TCGGATCGAC CCTAAATACG CGATCGCCTA CAATTATCGT
GGAAATGTTT ACGTTAGCAA GGGCGAGTAT GATCGGGCAA TTGCCGATTA CAGTATGGCC
ATCAGAATTG ATCCCGAGTA CACAGATGCC TACGACAACC GTGGCTACAT CTATCAAAAC
AAACATGAGT ACGATCGTGC AATCGCAGAT TACAATGAGG CAATCCGGAT CAACCCTGAG
CTCGTATCGG CTTATTTCAA CCGTGGTCTC ATCTACTACA ACATGGGGAA TTACGATCTA
GCAATAGCAG ACTACGGCAA TGCCATTCGG ATAGAACCTA ATCATAAGAG CGCCTACAAC
AATCGTGGTC TCGCCTACTT TGGCAAGGGT GAGTATGATC GAGCAATATC AGACTATGAT
GAAGCTATCC GAATTGATCC AAGTTACACA AGCGCCTATA TTAATCGAGC AAATCTCAAC
GACATCATAG GAGATATAGA TAAAGCATTA ATAGACTACA AGAATGTAAT ACTACTCGAT
CTAAACCATG AAATAGCCTA CATCAATCGC GCTCTCATCT ACCAGAACAA GAACAATTAC
GATCTAGCAA TAACAGATTG TAATAATGCC ATTCGCATAA AGCCTAAACA CGCAAATAGC
TATTTCATTC GTGGTGGTAT TTACTACGAC AAAACTGAAT ACGACCGGGC AGCGGTGGAT
TATAGCGAGG CTATCAGGAT CGATCCCAAG TACGCACTGG CCTATTTTAA TCGTGGGTTG
GCATACCTCA ATAAAAATGA ACCTAGACGA TCTCTTACCG ACTTTGCTGA GGCTGTCCGG
CTTAAACCGG AACTGGAGAA GAACGACAAC TTTCTGAAGG CGCGTGCCGA TGCGCAGGCG
GCTCTGACCC GCTCTCAAGA GCAGCGCCGG CGGCCGTAG
|
|---|
| Protein sequence | MQQIYVLTSS LALLALTTSA VQALDAAGYL NRGITYYGNR EYEQAIADYN EAIRIEPGLA
LAYLGRGSVY ESRREYDQAM ADYNKAIRID PKYAIAYNYR GNVYVSKGEY DRAIADYSMA
IRIDPEYTDA YDNRGYIYQN KHEYDRAIAD YNEAIRINPE LVSAYFNRGL IYYNMGNYDL
AIADYGNAIR IEPNHKSAYN NRGLAYFGKG EYDRAISDYD EAIRIDPSYT SAYINRANLN
DIIGDIDKAL IDYKNVILLD LNHEIAYINR ALIYQNKNNY DLAITDCNNA IRIKPKHANS
YFIRGGIYYD KTEYDRAAVD YSEAIRIDPK YALAYFNRGL AYLNKNEPRR SLTDFAEAVR
LKPELEKNDN FLKARADAQA ALTRSQEQRR RP
|
|---|
| |