| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan7425_1168 |
|---|
| Symbol | |
|---|
| ID | 7287088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7425 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011884 |
|---|
| Strand | + |
|---|
| Start bp | 1005509 |
|---|
| End bp | 1007905 |
|---|
| Gene Length | 2397 bp |
|---|
| Protein Length | 798 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643584176 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_002481911 |
|---|
| Protein GI | 220906600 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.676311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATC GCAGCATTCA TATTTTGAAT TGGGCTCAAA AGATTTGCCA TCATCCCATC
TCTAAAGGGT TCATCCTGAT CAGTGGACTG GCTTTAGCCG TGCGAATGTT CCCCTATCTC
ATTCCGATTC ATGCTGCGGA TTTAGTTCAG GAGGACCAGG CGATTGAGTT TCGCGATCGC
AACCATCTCT ACCTCGGTAC CTTACTCACC CGTGATCAGA ACCATACCGC TGTGATTGCG
CTACAGCAGG TTTCCCCCCA TTTTATTCAA GCAATTCTAG CGGCGGAGGA TGGGCGCTTT
TATCAGCATG GGCCCCTGGA TGGGTTAGCG ATCGCCCGAT CGTTACGGGA TAGTTTACAA
GCCGGAGAGA TCACCAGTGG AGCCTCCACG CTCACAATGC AACTGGCCCG GATGGTCAAT
CCTACACCCG CAACCCTGGG GGGAAAAGTG CAGGAAATCT GGTTAGCCTG GCGCTTAGCT
GCGGGGATGA GCCGAGATGA GATTCTGCAG GCTTATATCA ATCGTTTGCC GATGGGCGGC
AATGTCTATG GGGTGGAAGC AGCGGCGCGA GTTTATTTTG GCGTTTCTGC CACAGATTTA
ACCCCAGCTC AGGCCAGTTT GCTGGCAGCG TTGCCCAACG ATCCCACCGA TCTGCATCCC
TATCGCAACT GGCCGGGCTT GAAACAACGG CAGCGTTATG TACTCAGACG CATGGTGGAA
GAGGGCCATC TCACCGCCGC CCAATCTCAC CGTATTGCCC AGGAGCCCGT TACGTTACAA
CCCCGCCATC AGGGGATTCG GGCCGCTCCC CATTTTCTCT TCTGGGTTGC GACTCAACTT
CCTGCCCACG CCCCCGCTCA GGTTCAAACC ACGCTCGATC TGCCCTTACA GCAATTTGTG
GAAACTCAGG TGCAGCAGGT GGTTCGCTCG CTCAGGCAGC ATAATGGCCA TCAGGCGGCA
GCTTTAGTGA TTGATAACCA ATCTGGGGAA GTGCTGGCCT ATGTCGGTTC GCCGGATTAT
TTTCAGCAAT TGCAACTGGG AGAAAATGAT GGGGTCCAGG CTCTACGCCA ACCCGGTTCT
GCCCTCAAAC CCTTTCTCTA TGCCCTGGCG CTGGAACAGC GGGTGATTCG TCCCAATACC
ATTCTGGCGG ATGTGCCCAC CCACTATGCG ATACCAGGCG CAAGGCTCTA CAGTCCCCAG
GATTACAGCC AAACCTTTCT CGGTCCGGTG CGGGTGCGGC TGGCTCTGGC CAATTCCTTA
AATATTCCTG CGGTGCGGGT GCTGGAACAG GTAGGGGTGG CAACCTTTCT CAACCGTTTA
CGCCAACTGG GTTTTCAACA CCTGAATCGG CCCCCCGACT ATTATGGTCT GGGCTTAACC
CTGGGGAGTG GAGAAGTCAA CTTATGGGAA TTAGCCCGTG CCTACGCAAC GATCGCCCGT
CTGGGCCAAC CCCCTGGGCT CAAAGTGGTC AAAACCGATC GCCCAGAACA GCCTAGAACG
GGTTCTCATT CCGATCCTCT TGCCAGGATT GGGACAGCAA CGGATTGGGC TTTAATCATC
GATATGCTCA GTGACCCCCA TGCCCGTGCC CGTGCCTTTG GGGTGGAGTC TGTGCTGCAG
TTACCCTTCC CAGCGGCGGT GAAAACGGGA ACCTCCTCCA GCTACCGTGA TACCTGGACG
ATCGGCTTTA CGCGGGATTA CACCGTAGCC ACCTGGGTGG GCAATTTTAA CGGTGAACCG
ATGCGAAAAA TTTCCGGGGT GACAGGTGCC GCTCCCCTCT GGAATCGGAT TATGCTGCAT
CTCCACAAAG ATCAGGAACC CGCTCCCTTT CCGGCTCCCC AGGGACTGGT GCAACGGCCA
ATCTGTGCCT TATCGGGCTG GAAACCCACA CCTCCCTGTC CCACCGTCGT GCAGGAATAT
TTTACGCCTG AAGATCTAGC TGCCTACGAT CGCCATCGGG ATACCCTCTT TCAGGTTGTT
CCGGCTAGTA ATCAGAAAAA GTCTCCTTCC TATCGGCTGA ATTTACCACC GGAATATAAC
GAATGGCTGG CCACCCAGGG GAGTTTAGCG GGGGATACCA CACTTCGCAT TGCCTTTCCC
CGCAATGGGG ATTACTTTTT AATTCAGCCC GCCGATGCTG TGGAGCGCAA TCCTAACAAG
CAAGCCGCTG CCAAACTGGA ATTTAAACTG GCGGGTACAC CAGACCATCC CGTTGAGTGG
CGGCTCAATG GCCAGCTTTT GGCGACCCAA TCGGCCCCCT CCCTGTTCTG GAAACTTCGC
CCCGGCACCT GGACCCTGCA GATCCGCAGT GGTGAACAAA CAGAGAGCGT CCAGTTTGAA
GTGGCGGTCG GGCAACCCAG TCAGCGCCGG GGATTTTCTT TATCTCAGTT GCCTTAG
|
|---|
| Protein sequence | MQNRSIHILN WAQKICHHPI SKGFILISGL ALAVRMFPYL IPIHAADLVQ EDQAIEFRDR
NHLYLGTLLT RDQNHTAVIA LQQVSPHFIQ AILAAEDGRF YQHGPLDGLA IARSLRDSLQ
AGEITSGAST LTMQLARMVN PTPATLGGKV QEIWLAWRLA AGMSRDEILQ AYINRLPMGG
NVYGVEAAAR VYFGVSATDL TPAQASLLAA LPNDPTDLHP YRNWPGLKQR QRYVLRRMVE
EGHLTAAQSH RIAQEPVTLQ PRHQGIRAAP HFLFWVATQL PAHAPAQVQT TLDLPLQQFV
ETQVQQVVRS LRQHNGHQAA ALVIDNQSGE VLAYVGSPDY FQQLQLGEND GVQALRQPGS
ALKPFLYALA LEQRVIRPNT ILADVPTHYA IPGARLYSPQ DYSQTFLGPV RVRLALANSL
NIPAVRVLEQ VGVATFLNRL RQLGFQHLNR PPDYYGLGLT LGSGEVNLWE LARAYATIAR
LGQPPGLKVV KTDRPEQPRT GSHSDPLARI GTATDWALII DMLSDPHARA RAFGVESVLQ
LPFPAAVKTG TSSSYRDTWT IGFTRDYTVA TWVGNFNGEP MRKISGVTGA APLWNRIMLH
LHKDQEPAPF PAPQGLVQRP ICALSGWKPT PPCPTVVQEY FTPEDLAAYD RHRDTLFQVV
PASNQKKSPS YRLNLPPEYN EWLATQGSLA GDTTLRIAFP RNGDYFLIQP ADAVERNPNK
QAAAKLEFKL AGTPDHPVEW RLNGQLLATQ SAPSLFWKLR PGTWTLQIRS GEQTESVQFE
VAVGQPSQRR GFSLSQLP
|
|---|
| |