Gene Ddes_2289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_2289 
Symbol 
ID7286007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand
Start bp2756605 
End bp2758854 
Gene Length2250 bp 
Protein Length749 aa 
Translation table11 
GC content60% 
IMG OID643583112 
Producthelicase, RecD/TraA family 
Protein accessionYP_002480862 
Protein GI220905550 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00901153 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGACA TGCCCCTGCT GCAAGACCCG GATGCCGTGG AAATTTCCGG CACTGTGGAG 
CGCGTTATCT TTCATAATGA AGAAAACGGC TATACTGTAC TGCGTCTTAT GCCTGCCAGC
GTCAACAGCG GCGGAGGCGA CGGCGGCCTC ACGCGCCCGC GCGACTCCGT AAGCTGCGTG
GGTCACATGG TCAATCCGCA GGCGGGCGTA CAGATGAAAC TCGGCGGCCG TTGGGTCAAT
AATACCCGTT TTGGCCGCCA GATAGAGTTC AGCCACGCTG AAGAAATGCT GCCTGCCACC
AGTGAGGGCA TACGCCTGTA TCTGTCTTCA GGGCTTATCA AGGGCGTGGG CGAAGAGATG
GCCTCGCGCA TCGTCAAGGC GTTCGGCACA GACACCATAC GGGTGCTGGA CGAAGAGCCG
GAGCGCCTGC TCAAGGTGCG CGGCGTGGGG CAAAAAAGCC TGGAGCGCAT CCGCGCATCG
TGGAGCGAAC ACCGCGGCAT ACGCGACCTG CTGCTTTTTC TGCAACCTCA CGGCATCACC
CCGGCCTATG CTGTACGCAT CTACCGCGCC TACGGGGCGG ACGCCCTGGG CATCGTGCGT
GAAAACCCCT ATCGCCTTGC CATGGATATC CACGGCATAG GCTTTGTCAC CGCCGATGCC
GCGGCCCGCA AGCTGGGCTT CGAGCACGAC CACCCCTTGC GCGTACAGGC AGGCACACTC
TACGTGCTGC AAAAAGCCAC GGATGACGGC AACGTGTACC TGCCGCAGAC CGCGCTTATG
GAGGCCGTAT GCGCGCAACT GGGCGTTGAC GAGGACCTTG TTTCCGACGC TCTGGCCGCT
CTTGAGGCGG ACGAGCGCAT CGTGCGCGAA GATATGGACA TGCCCGGCCC TGACGGCACA
CAGCCTGAAA CAGGCGTGTA CCTGCGCCGC TATTTTCACT GCGAGTCCAA AACCGCGTTC
TACCTGCAAC GGCTCATGCG TTCGCCCAAA TCCATTCGTT TTGAAAACCC CGACGCCCTG
GTGGACAAGG TGGTGGGTGA ACTCAACATA TCCCTTGCGC CGGAACAGCT TGAGGCCGTG
CGTACCTCGG CCCGCAGCAA GGTTATGGTG CTTACGGGCG GCCCCGGCAC AGGCAAGACC
ACCATCATCA ATGCCATTAT CAGGCTTTTT GCCGAGGTGC GCGCCCGCAT CCTGCTGGCT
GCGCCCACAG GACGCGCCGC CAAGCGTATG GCCGAAACCT CGGGGCGTGA ATCCCGCACC
ATTCACCGCC TGCTGGAATA CAGCCCCAAG GAGGACGGCT TCGCCCGCAA CGAAGACAGT
CCTCTGGCCT GCGGCCTGCT GGTGGTGGAC GAAGCCTCGA TGATGGACAC CCTGCTTTTT
TACCACCTGC TCAAGGCCGT TCCCCTGGGC GCGACCCTTG TACTGGTGGG CGATGTGCAT
CAGCTGCCCT CGGTGGGTCC GGGCAACGTG CTGGCCGACA TAATAGCCTC CGGTGTGGTT
CCTGTGGTAG AGCTGACCGA AATATTCCGC CAGTCGGCAG AAAGTGAAAT TATCTGCAAC
GCCCACCTTA TCAATCGCGG CGAGGTTCCT TCGCTGGAAT CCAGCAAAGA CCGCCTTTCG
GACTTTTACT TCATCCACCA GAATGATCCG GAAAAAGCCG CCGACCTTAT GGTCGACCTG
GTGCGCAACC ATATTCCGCG CCGCTTCGGG CTTGACCCGG TGGACGACAT CCAGGTGCTT
ACCCCCATGC ACAAGGGAGC TGTGGGCGCG GGACATATGA ATACGCGCCT GCAGGAGGCC
CTGAACCCCA ACGGCCTTGA AGTGCGGCGC GGCGAACGCG CCTTTCGCCT GCACGACAAG
GTCATGCAGA TACGCAACAA CTACGATAAG GACGTGTTCA ACGGCGACAT GGGGCGGATC
AGCTTTCTTG ACCTTGCCGA CCGCACCCTG AGCGTCACCT TTGACGAACG CGTGGTCCCC
TATGAATTTG ATGAGCTGGA CGAGCTGGCC CCGGCCTACG CCATATCCAT TCACAAATCC
CAGGGGTCGG AATATCCCGC CGTGGTCATA CCCATCATGA TGCAGCACTA CGTGCTGCTG
CAACGCAACC TTATCTATAC CGGAGCCACG CGCGGCAAAA AGCTTGTCAT TCTGGTGGGC
GAATCCCGCG CTCTCCACAT GGCGGTCAAA AACAACAAGA CCCGCAAGCG TTACACCCGG
CTGGCCGAAC GGCTGGCTCC CGGCGAGTAA
 
Protein sequence
MKDMPLLQDP DAVEISGTVE RVIFHNEENG YTVLRLMPAS VNSGGGDGGL TRPRDSVSCV 
GHMVNPQAGV QMKLGGRWVN NTRFGRQIEF SHAEEMLPAT SEGIRLYLSS GLIKGVGEEM
ASRIVKAFGT DTIRVLDEEP ERLLKVRGVG QKSLERIRAS WSEHRGIRDL LLFLQPHGIT
PAYAVRIYRA YGADALGIVR ENPYRLAMDI HGIGFVTADA AARKLGFEHD HPLRVQAGTL
YVLQKATDDG NVYLPQTALM EAVCAQLGVD EDLVSDALAA LEADERIVRE DMDMPGPDGT
QPETGVYLRR YFHCESKTAF YLQRLMRSPK SIRFENPDAL VDKVVGELNI SLAPEQLEAV
RTSARSKVMV LTGGPGTGKT TIINAIIRLF AEVRARILLA APTGRAAKRM AETSGRESRT
IHRLLEYSPK EDGFARNEDS PLACGLLVVD EASMMDTLLF YHLLKAVPLG ATLVLVGDVH
QLPSVGPGNV LADIIASGVV PVVELTEIFR QSAESEIICN AHLINRGEVP SLESSKDRLS
DFYFIHQNDP EKAADLMVDL VRNHIPRRFG LDPVDDIQVL TPMHKGAVGA GHMNTRLQEA
LNPNGLEVRR GERAFRLHDK VMQIRNNYDK DVFNGDMGRI SFLDLADRTL SVTFDERVVP
YEFDELDELA PAYAISIHKS QGSEYPAVVI PIMMQHYVLL QRNLIYTGAT RGKKLVILVG
ESRALHMAVK NNKTRKRYTR LAERLAPGE