| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_2251 |
|---|
| Symbol | |
|---|
| ID | 7285968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | + |
|---|
| Start bp | 2711111 |
|---|
| End bp | 2712763 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643583073 |
|---|
| Product | (Uracil-5)-methyltransferase |
|---|
| Protein accession | YP_002480824 |
|---|
| Protein GI | 220905512 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000149323 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATA CCATTACCCT TCAGATAGAA AGCCTGACCC ATGACGGTCG CGGCCTGGCC
CGCGCCCACG GCGACGCGAT TTCCATATCC GGCTCCGCTC CGGCGGGCGG TCGGGCCTCC
GGGCGCACCC GCAACCGTGG CACTGTTGTT TTTGTGACCG GCGGCCTGCC CGGGCAGACC
GTGCGTGCGC GCATCACCCG CCGCAAATCC AGCTTCTGTG AAGCCGAAAT GCTGGAAGTC
CTGCAGGATG CCCCGCGCTC TGCACCGCCC GCCTGTACCC ACCACGGCGA CTGTGGCGGA
TGCCCGCTGC AGACCATGCC GTACGATATG CAGTTGCAGT GGAAGCGCCG CATCGCCCTT
GATGCCATGA GCCGCATCGG CGGCCTGGAC GCCGGGCTTG TGGAGAGCCT GTTTACCAGT
GTCCTGCCTT CTCCCGCGCT TGAACAGTAC CGCAACAAGA TGGAACTGGC CTTTGCCGGC
AGCGGCACGG AGGGCGACCC CCTGATACTC GGCCTGCGCC GCCGGAACGG GCGCGGCGTG
GTTTCTGTGC CTCAATGCGC CCTGCTGCCC GCCGCAGCCC GTGACATTGT CCGCATGGCG
GCTGATCTGG CGGCACAAAG CGGACTGCCG GCGCATACCC CACGCGATCA GGCCCGCTAC
AGGCAAGCGC CCCAGGAAGA CACTGCGCAC CACGGCAAGC CGGACGGCAA AGGCAGGCGC
GGCTCACGCC CGGCCCGCCG TGCACCCGCA AACAGCATCG CAGCAGCAGC TATGGCCGCA
GAAGCAGTGC AGAACAACGG CTTCTGGCGT TTCCTCGTTT TGCGGCGCGG GCTTTCCGCC
GACCTGCGCA CTCCCGGCTG GTGGGCACTT TGCATCACCA GCCCGGGCAG CCATGAAGAG
CAGGAAAAAG TACGAACTGT GGGCCAGAAG CTGCTCCAGT CCTTTCCCGC GCTGGCCGGA
TTCATTCACG AAGAACGCGC CAGTGAAGAC GCCCTGGCCC AAGGGCAGAA GCGCATCGCC
AGCCTGGACA GGACCGGCGC GCACAATCCG GCCTCGGCCC GCTTTTGGCA GCCCCTTGGC
GGGCGCCATT TCGCCCTGGA TGCCGCATCG TTTTTTCAGG TCAATACCGC TGCGGCGCAG
GTGCTGGCAG ACACGGCACT GGGCATGCTC AAGCGGCATG TCAGCCAGGA ATCTCCCGCG
CTGCTCGATC TCTACTGCGG CGTGGGCGCT CCGGGCCTGC TCATGGCAGA CCGCTGCGGC
CGCCTGCTCG GCCTGGAACA GGACGCAAAA GCTGTTGCCC TGGCACAGGC CAACGCCGCC
GCCATGGGCT TTACCCATTG CTCCTACGTG GCCGGCGACG CCGCCCAGCG GCTGGACAGA
CTTGCCCCCG CGCACGAAAA TTACTGGCAC CCCACGGAAA CATGGGACGC CGTGCTGGTG
GACCCGCCGC GCGCGGGCCT TGCCCCCCGC GCCCTGAATG CACTGCTGCG GCTCAATGCC
CACACCATAC TTTATGTGTC ATGTAATCCG GCCACGCTGG CCCGGGACGC GGCCCGGCTT
CGCGGGGCCT ACCGGCTGGT GGAAATGGCC GCAGTGGACC TGTTTCCGCA TACACCGCAT
GTGGAATGCC TGACCCTGTG GCAAAGCCTG TAA
|
|---|
| Protein sequence | MNDTITLQIE SLTHDGRGLA RAHGDAISIS GSAPAGGRAS GRTRNRGTVV FVTGGLPGQT
VRARITRRKS SFCEAEMLEV LQDAPRSAPP ACTHHGDCGG CPLQTMPYDM QLQWKRRIAL
DAMSRIGGLD AGLVESLFTS VLPSPALEQY RNKMELAFAG SGTEGDPLIL GLRRRNGRGV
VSVPQCALLP AAARDIVRMA ADLAAQSGLP AHTPRDQARY RQAPQEDTAH HGKPDGKGRR
GSRPARRAPA NSIAAAAMAA EAVQNNGFWR FLVLRRGLSA DLRTPGWWAL CITSPGSHEE
QEKVRTVGQK LLQSFPALAG FIHEERASED ALAQGQKRIA SLDRTGAHNP ASARFWQPLG
GRHFALDAAS FFQVNTAAAQ VLADTALGML KRHVSQESPA LLDLYCGVGA PGLLMADRCG
RLLGLEQDAK AVALAQANAA AMGFTHCSYV AGDAAQRLDR LAPAHENYWH PTETWDAVLV
DPPRAGLAPR ALNALLRLNA HTILYVSCNP ATLARDAARL RGAYRLVEMA AVDLFPHTPH
VECLTLWQSL
|
|---|
| |