| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_2085 |
|---|
| Symbol | |
|---|
| ID | 7285801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | + |
|---|
| Start bp | 2510465 |
|---|
| End bp | 2511424 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643582907 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | YP_002480659 |
|---|
| Protein GI | 220905347 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.744558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAG ACCTCTGGGC CTGCCTGCCG TCAGGTCCGC CGCCATGCCT GCCCGCCAAC
CCTGTAGCCT GTCTGCCCGC TGCACCGCCT TCTCCGCACG ACCACGGAGA AGATGCCGTC
CGCAAAAACG GCGGGCAGAC AGGCCGCCTT GCATGGCCGC ATGCTGCCTG TCCCGGACAA
ACCGTGCTTT TTTACCGCGC CCGCGGGATC CTGGGGCTGG CAGCCTCTCT GTTTCTGCAC
GCCATTTTTC TGTCGGCCCT GCTGGGCTTA TCGTTCCAGG CGGTTCAGAA TGCTCCCGGA
AACGCCATTG CCGTGTCACT GATGCGCCTT GGCGCTGCCC CGGTTCCTGC CACAGGCACC
ACCGGGCTTC CTGCGGATGC TCCGCCGCCT CTCGCTGCTC CCGTGCAGCC GGAACCCGCC
GCGGCCGAGC GGCAACCCGC AGCGCCCCCG CCGACGGCAG ACACCCGGCC CAAAACGGTT
TCGCCCCAAA AAACGGCGCT TGCATCCGCC GGCACAAATA AACGCACTAC ACCTCCATCC
GCGCCTGAAA AACACCAATC CGCCACACCG CCCGCAGCCA CGCCCGTGCA GGCTTCCACC
GGCGGCGCTG CCGCAGACGC TTCAGCCTCC TCCGCCACTG ACGCTGCCAC AGCGGCAGGC
GCTGACAAAG TGTACTCTCC CCGTCAGCTT GACCAGTCCC CCGCCGTGAC CAAAGGAGTC
AGGCCGGAGT ACCCGCCTTC CGCCCGCAGC CGCAAGGTGG AGGGGCGCGT TATCGTGCGC
ATGGTGGTGG AGACCAGCGG GCAGCCCGGA CAGTGCAGCA TCCACAGCGC CACCCCCCAG
GGATATTTTG AAGAAGCCGC CCTGGACGCC GCCCGCCGCA TGCGGTTCCG CCCCGGAACC
AAAGCCGGTA AAGCCGTCCG CACGCTGGTA CTGCTGCCCT TTGACTTCAG TCTCCGCTAA
|
|---|
| Protein sequence | MPADLWACLP SGPPPCLPAN PVACLPAAPP SPHDHGEDAV RKNGGQTGRL AWPHAACPGQ
TVLFYRARGI LGLAASLFLH AIFLSALLGL SFQAVQNAPG NAIAVSLMRL GAAPVPATGT
TGLPADAPPP LAAPVQPEPA AAERQPAAPP PTADTRPKTV SPQKTALASA GTNKRTTPPS
APEKHQSATP PAATPVQAST GGAAADASAS SATDAATAAG ADKVYSPRQL DQSPAVTKGV
RPEYPPSARS RKVEGRVIVR MVVETSGQPG QCSIHSATPQ GYFEEAALDA ARRMRFRPGT
KAGKAVRTLV LLPFDFSLR
|
|---|
| |