| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_1965 |
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| Symbol | trmE |
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| ID | 7285681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011883 |
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| Strand | - |
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| Start bp | 2368591 |
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| End bp | 2369997 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643582787 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002480539 |
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| Protein GI | 220905227 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCA ACGACACCAT AGCAGCCATT GCCACGCCCC CCGGATCCGG CGGGGTCGGC
ATTGTGCGTA TTTCCGGCCC CGAAGCCAAG CAGACGCTCG CGCGCATGTT TTTGCCCCTG
TCGCCGAAAT TTGAAAACTT TCGCCCCTGG TTTCTGCACA GGGGACGCGT CGTGGACTGG
AACGGGGAAA ACCTGGATGA CGTGCTTGCT GTCTTTATGC CCGGTCCGCG CAGTTTTACC
GGCGAAGATG TGGCTGAAAT ACATTGTCAT GGCGGCCCGT TTATTGTGCA GTCAGTGCTT
GAGGCTGCCT TGCGTCTCGG GGCGCGCCAG GCACAGCAGG GCGAATTTTC GCGTCGTGCC
TTTATCAACG GGCGTATGGA CCTGAGCCAG GCTGAAGCTG TGGCCGAACT GATTGCCGCG
CCTTCGCGCG AAGCCCTGCG TTACGGCCTG AACCGGCTGG ACGGGCTGCT GGCCCGCCGG
ACGGAGACTC TGCGCCGCGA GCTTGAAGAC CTGCGCATGC AGGTCTGCGT GGCCGTGGAT
TTTCCCGAGG ACGAAGTGGA AGGCATGGAT GCGCCCACGT TCAGCGCGGC TGTGGAAAAA
GTGGCTTCGG CCTTGCGTCA TCTGCTTCAG GGCAGCCGCA GGGCGCGGGT CATGCAGCAG
GGTGCTGTGG TTGTGCTGGC CGGGGCGGTC AATGCGGGCA AGTCCAGTCT CATGAACGCG
CTGCTTGGGC GCAACCGCGC CCTGGTTACC GATATTCCCG GTACAACGCG GGACTTTCTT
GAAGAAGCCT GCGATCTTGG CGGCCTGCCC GTGCGGCTGA CAGATACTGC CGGCTTGCGC
AAAGCTGCAG AAAGTATTGA AGAAATGGGC GTTGAGCGCA GCAGGCAAAA ACTGGCTGAA
GCCGATGCTG TTGTTTTGGT GCTTGACGGC GGCGTGTTGG GAGAAGCCGG AGCCGCTGCC
GCGACCTGCC CTGACCCCGC TGCCCGGGAA GTTCTGGAGC TTGCCGGTGC TACACCTGTG
CTGGTTGTAT GGAACAAATG CGATCTGTGC ACGCCTTCGG TTTTTCCGCC TCGCTGGATT
CAGGGGCAAA CCTGTTGCAC AACAAGCGCT TTTTCCGATA CACAGGTGGA GGACATGGCC
GAAAGCTTGC GCGCCCTGCT GCTGGCCGGC GGCGGGGGAG CCGCCGCAGA AGAGGGGCTT
GCTCCCAATG CGCGGCAAAG CATGGCACTG GAAGCGGCCC TGGCCGAACT GGCGGCCCTG
CGGGAAGATG TGGATGCCGG GCGGTCGTAT GACTGTTGCG CCGTGCGCCT GGACGTGGCT
GCCGCCCATC TGGCGGAGGT AACAGGCCTG AGCAGCCCCG CTGAGGTGCT GGACAGGGTT
TTTTCTCAAT TTTGTATCGG CAAGTAG
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| Protein sequence | MSTNDTIAAI ATPPGSGGVG IVRISGPEAK QTLARMFLPL SPKFENFRPW FLHRGRVVDW
NGENLDDVLA VFMPGPRSFT GEDVAEIHCH GGPFIVQSVL EAALRLGARQ AQQGEFSRRA
FINGRMDLSQ AEAVAELIAA PSREALRYGL NRLDGLLARR TETLRRELED LRMQVCVAVD
FPEDEVEGMD APTFSAAVEK VASALRHLLQ GSRRARVMQQ GAVVVLAGAV NAGKSSLMNA
LLGRNRALVT DIPGTTRDFL EEACDLGGLP VRLTDTAGLR KAAESIEEMG VERSRQKLAE
ADAVVLVLDG GVLGEAGAAA ATCPDPAARE VLELAGATPV LVVWNKCDLC TPSVFPPRWI
QGQTCCTTSA FSDTQVEDMA ESLRALLLAG GGGAAAEEGL APNARQSMAL EAALAELAAL
REDVDAGRSY DCCAVRLDVA AAHLAEVTGL SSPAEVLDRV FSQFCIGK
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