| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_0910 |
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| Symbol | |
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| ID | 7284586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011883 |
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| Strand | + |
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| Start bp | 1057280 |
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| End bp | 1060819 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643581706 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002479495 |
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| Protein GI | 220904183 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACTGC GGTTCTACGC CGCACTCCCG CATTACAGCG TGCCGGAAAA GTACGCTGTA
TGGAATATTT TCATGAGTAA TTTCAGCACA GTACTGGCAA GCAAGGAAGG ACAGGTTTAT
ATCGAGCGCA GCGGCATGGC CACACGCTGC CGCCTCGCCG CCGAGGCCTT TACCCAAGGG
CGTACCGTGG TGCTGGTGGC CCGTGACCGG GAAGAGTATA ACAGCGCTCG CGCCTTGCTG
ACGCTTTTTA CCCCCGAGCT TTCGCTGGCC GACAAATCTG TTTCAGAACC TCAGTGGAAC
AGCCCATGCC TGACCCTGCC GCCCCTGAGC CAGTGGCAGG ACAGGGCCTC ATGGTCGGCG
CGCCTTGCCG CCCTGTACGG TCTTGCCCAG GGGCGGCCAC GTTGTATTGT CTGCAGTGTC
GAAAGTCTTC TGCTGCGCCA TATTCCCCTG GATTTTTTTG CCGCCCGCAA CCTTGATTTG
CGCAAAGGCA GCGACTATGC GCCTGAACTG CTGCTGGATC AGGCCGTTGA GTGGGGATAT
GAACGTGTCC CCATGGTGAC GCGACCCGGA GAAATGGCCC GCCGCGGCGA TATTCTGGAT
ATCTTTCCCA CAGGTCATGT AAAGCCGGTA CGTCTGGAAT TTTTTGGCGA TACGCTGGAT
GAAATGCGTG TTTTTGACGC TGAAAGCCAG CGCTCGCTGC AGGGCTGTGA TGAACTGGTT
CTTCTGCCCG CCAGCCCGCT TGCCCTGGAC GCCAAAAGCC TTGCCGCGGC GCGTGAGCGT
TGCGACCGCA TGTTTGCCGA GGGCCGCATC AGCGAAAACG AGTGCTATTC TTTCAAAAAA
TCTCTGGATG GCGGCGGTCT GGGGCTTTTG CCCGGCAGCG TACTTGCATC GCCAAGCCTG
TTTGAAGACT GGCTGCCCAA AGACAGCCTG TGGCTTTTGC CCGGCGAAAG CGACAGTGCC
GATGCCCTGC GCGATGGTCG CCTGAACCTC AAGGAAAGGC TGGAAGCCGC CGATGCCCCC
CTGCCGCAAC CCGCATCACT GGCGCTGCGC AAAAGTTCGC AGCCCGCCCC CTGGAACACA
TTCCAGCGTG TTTACGCCGA ACCACTGGTT ATGGGCGTGG AAGAGCGGGG GCTGGACCTG
CCCGAACGGC CCTTGCATTC CTTTATCGAT CTTTTCCCCC TGCCCGGGGC GCAGGACCGC
CCCTGGCAAC ATCTCGCTGC GGGTCTCAAG GAATGGAAGA GCAGCCGCCG TCAGATTGTG
TTAAGCTTTT CTTCGGGCAG AAGCCGCGCA AAATTTCTGA AACTTGCGGA GCAGGACGGC
ATCGTGCCCG CCTTGAGGTA TGCGCCCGAG CAGCGGGGGC TGTTCGCTCT GGTTTCGCCT
TTCCGCTCCG GAGCCGAGCT TGTCTGGGAC GATGTTCTGG TGCTTGGCGA AGACATCCTT
TACCCCAAGG CTGAAAAAAC GCCGCGGGTC TCTTCCCGCG TGTTCAAGGG ACTGGACTCT
TTTGATGACC TGAAGCCCGG AGATCTGCTT GTCCACAGGG ATTACGGCAT AGGTCGCTTT
GCGGGTCTGC ACCATCTTGA TCTCAATGCC GCCGCCAACG ATTTTTTGCT GGTGGAATAC
TCCGGGCGCG ACAAGCTCTA CGTACCTGCC GACAGGCTGG GCCTCATCCA GCGCTTCAAG
GGAACCGAAG GCGTGGAGCC TGCCCTTGAC CGTCTGGGCG GCGCGGCCTG GGTGGCAGGT
AAGGAAAAGG CGCGCAAGGC CATTGAAAAG ATTGCCGCCG ACCTTGTGGA GATGTACGCC
TACCGCAAGG TAACCAAAGG CTTTCGTTAC GATCCGCCCG GCGAGCTGTA CCACGAGTTT
GAGGCGACAT TCGGCTTTGA GGAAACCCCC GATCAGGCCA AGGCTATCCA GGATGTGCTG
GACGATATGG ACAGGCCGCG TCCTATGGAC CGCCTTGTGT GTGGCGATGT GGGTTTCGGC
AAGACAGAGG TGGCCCTGCG CGCAGCCTTT CGTGCTGCTT CCGAAGGGCG GCAGGTGGCC
TTGCTGTGTC CCACCACGGT GCTGGCCGAG CAGCATTATC AGACATTTCG GGCGCGTCTG
GCGGGCTTTC CCGTCAATGT GGGGCTGCTC AGCCGCTTTG TGCCTCGGCC CAGGCAAAAA
GAGGTGCTCA AGGCCGCCGC TGCCGGGCAG ATAGATATTC TCATCGGTAC GCACCGTATC
CTTTCCAGTG ATGTGAAGCT GCCCAACCTG ACGTTGCTCG TTCTGGACGA AGAACAGCGC
TTCGGTGTGC GTCACAAGGA AAAGCTCAAG GCTCTCAAGA AAAACGTGGA CGTGCTGACG
CTCACGGCCA CGCCCATACC GCGTACCCTG CAGCTTTCAA TGTCCGGCAT ACGCGAACTT
TCCATCATCG AGACAGCGCC GCAGGACCGC AAGCCCGTGG CCAGCGCCGT GCTGCGCAAG
GATGACAATG TGCTGCGCAA GGTGCTGGAG CGGGAAATCG AGCGGGAAGG GCAGGTCTTC
TGGGTCTACA ACCGTGTGCA GGGCCTGGAG CGCGTGGCCG AATATGTACG CGGCCTTGTT
CCTGATGCCC GCGTAGGCAT GGCTCACGGC CAGATGTCCG AGGCCGAGCT TGAAGATACC
ATGCACAAAT TCTGGCACGG CGAACTGGAT GTGCTTGTCT GCACATCCAT TGTGGAATCC
GGGTTGGATT TTCCCCGCGC CAATACGCTT GTAGTGGACC AGGCGCAGAT GTTCGGCCTG
GGGCAGCTGT ACCAGCTTCG CGGACGTGTG GGCCGCAGCG ACAGGCAGGC ATATGCCTTT
TTTGTGGTTC CCGATGCCGA GCGGCTGACG GCTGTGGCCG AAGAGCGCCT GCGTATCATT
CTGGACATGG ACTATCTGGG CGCAGGCTTT CAGGTCGCCA TGGAGGATTT GCGTCTGCGC
GGTGCCGGGA ATATACTGGG CGAGGTACAG TCCGGTCACA TGTGCCGTGT GGGGCTGGAC
CTTTACCTTG AAATGCTTGA AGAGGCCGTG GGTCGCCTCA AGGGCACGCC CGAAAGTCTG
GTCAGCGAAA CCGAGCTTAC TCTCGGTCTG CCCGCCCATA TTCCGGCATC GTATATCGAC
GATGGCCGTG AACGGCTGCG CTGTTATAAG GCCCTTACTT CCGCCCAGGG CGGGGCCGCC
CGAGAAGAGA TCGCCCTCTC CATACGCGAC CGCTTCGGTC CCTTCCCCGA GGAACTGGCG
AACTTTCTGG CCGTTCTGGA TTTCAAGCAG TTTCTTACGG AACTGCAGGT GCAAAAGGCC
GATGTGCACC GCGAGCATGT GCGCCTGACC TGGCCCGACG GGCAAACGGC CGTGCAGCCC
GAACGCATTG TGGCGCTGGC CGCGTCCATG CCCGGAGCGC GCATGCAGCC CCCGGCCGGG
CTGACCCTGC CGCTGGCGAA AGATATGCCT CTTGCCGGGG GGCTTGACAG ATTGCGGCAG
GCCCTGGAAG ACATACGTAT GCCCGTTGCG GAAAAGGCCG AAGAAAAAGC CCCTGCCTGA
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| Protein sequence | MTLRFYAALP HYSVPEKYAV WNIFMSNFST VLASKEGQVY IERSGMATRC RLAAEAFTQG
RTVVLVARDR EEYNSARALL TLFTPELSLA DKSVSEPQWN SPCLTLPPLS QWQDRASWSA
RLAALYGLAQ GRPRCIVCSV ESLLLRHIPL DFFAARNLDL RKGSDYAPEL LLDQAVEWGY
ERVPMVTRPG EMARRGDILD IFPTGHVKPV RLEFFGDTLD EMRVFDAESQ RSLQGCDELV
LLPASPLALD AKSLAAARER CDRMFAEGRI SENECYSFKK SLDGGGLGLL PGSVLASPSL
FEDWLPKDSL WLLPGESDSA DALRDGRLNL KERLEAADAP LPQPASLALR KSSQPAPWNT
FQRVYAEPLV MGVEERGLDL PERPLHSFID LFPLPGAQDR PWQHLAAGLK EWKSSRRQIV
LSFSSGRSRA KFLKLAEQDG IVPALRYAPE QRGLFALVSP FRSGAELVWD DVLVLGEDIL
YPKAEKTPRV SSRVFKGLDS FDDLKPGDLL VHRDYGIGRF AGLHHLDLNA AANDFLLVEY
SGRDKLYVPA DRLGLIQRFK GTEGVEPALD RLGGAAWVAG KEKARKAIEK IAADLVEMYA
YRKVTKGFRY DPPGELYHEF EATFGFEETP DQAKAIQDVL DDMDRPRPMD RLVCGDVGFG
KTEVALRAAF RAASEGRQVA LLCPTTVLAE QHYQTFRARL AGFPVNVGLL SRFVPRPRQK
EVLKAAAAGQ IDILIGTHRI LSSDVKLPNL TLLVLDEEQR FGVRHKEKLK ALKKNVDVLT
LTATPIPRTL QLSMSGIREL SIIETAPQDR KPVASAVLRK DDNVLRKVLE REIEREGQVF
WVYNRVQGLE RVAEYVRGLV PDARVGMAHG QMSEAELEDT MHKFWHGELD VLVCTSIVES
GLDFPRANTL VVDQAQMFGL GQLYQLRGRV GRSDRQAYAF FVVPDAERLT AVAEERLRII
LDMDYLGAGF QVAMEDLRLR GAGNILGEVQ SGHMCRVGLD LYLEMLEEAV GRLKGTPESL
VSETELTLGL PAHIPASYID DGRERLRCYK ALTSAQGGAA REEIALSIRD RFGPFPEELA
NFLAVLDFKQ FLTELQVQKA DVHREHVRLT WPDGQTAVQP ERIVALAASM PGARMQPPAG
LTLPLAKDMP LAGGLDRLRQ ALEDIRMPVA EKAEEKAPA
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