| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_0737 |
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| Symbol | |
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| ID | 7284411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011883 |
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| Strand | - |
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| Start bp | 868362 |
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| End bp | 870920 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643581533 |
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| Product | ribonuclease R |
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| Protein accession | YP_002479323 |
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| Protein GI | 220904011 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.428134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGC AAAAAAAACT TCGCGGAACC ACTACGGCTT CCGCCCCTGC CAGCGGCGGT
TTTCCCTCGA CTGAGGAACT GCTGCAAACC CTTGCCGCCC AAAACCGCCC CATGCGGCTG
GACGGCCTTT TGCGTGTTCT GGGCCTTGCC CGGCGCGAAA GAAAAGAACT TGAAGCCGCC
CTTGATGATC TGGAGCGGCA AGGCAGCGCC CTGCGGCTGC GTGGCGGCCT GTGGACGCGC
CCTGAAAACC TGAAAAGCAT TACGGGACGC TTCAGCGCCC TGCGCGAAGG CGCGGGCTTT
GTAACCCCCA TGCGGCTGGC TGCCGATGAC GAACAGGAAA GCCCCCGGTG GCAGTTTTCC
GGCGGCAAGG ATATTTATAT CCCTTCGGCC CAAAACGGCG GTGCATGGCA TCAGGATCTG
GTGCGCGTGG CCCTTTCACC CGGTGCGCAG CGCGGCCCTT CACCTGAAGG GCGCATCGTT
GAAATAGTTG AGCGCGGCCT CAAGGAAGTA CCCGCCCACG TGGTGCACCG CCACGGCAAC
AGCCTGTTCT GCCGCCCCGC GGACAGCAGA CTGCCTGCCG ATTTTAACGT GGAACTGCCC
GCAGGCTCCG AAGCTCCCGC CCAGGGAACC CTTGTGCTGC TGGCCCCACT CAAGCCGCTG
GCTTCAGACC TGTGGAGCGC GACACTTCTG GGCAACTACG GGCGCGAAGA TGACGTGGCC
GTGCAGGAAG AGCTGGTCAA GCTCAACCAC GAGGTCCCTC GTGATTTTCC TGCCGGGGCA
CTGGCCGAGG CCGAAGCCCT GCCCGGCGAA GCCGATTTCA AGGGACGCAG GGACGTGCGT
GACCTTGCCC TTGTGACCAT TGACGGCGCG GACGCCCGCG ACTTTGACGA TGCCGTTCAT
GTCGAGGAGC AGCCCGGCGG CAAGGGCTGG GTCTTGCGCG TTGCCATAGC CGACGTGAGC
CACTATGTGC GCCCGCGCGG GCGCGGCTGC CCCGGCGCCC TTGATGCCGA GGCCCTGTCG
CGCGGCAACT CATGGTATTT CCCCCGCTCT GTGGAACCGA TGCTGCCCGA AGTGCTGTCC
AACGGCCTGT GCAGCCTGCG TCCCCACGTG AACCGTCTGG CCGTACTGGC CGAAATTCCC
TTTACCGCTG CGGGCAAGCC CGGTAAACCG CGTTTCTCTG AAGTGGTCAT GCGTTCGGCT
GCCCGCCTGA CCTATGATCA GGTCAAGGCC TGCATACTTG ATAAGGATGA AGCCGCCCTT
GCGGAGCTGC GCACCGAAGA ACGCGGTGAA GAAGTGCTTG CCATGCTGGA CAAGGCCTTT
GCACTGTATA CGGTTTTGCG CGACGTGCGC CGTCAGCGCG GCACGCTGGA CTTTGACCTG
CCCGAAGCCC AAAGCCGCCT GGACGACCTT GGCCGTGTGG TCTGGCTCGG CCACCGGGAG
CGCAACGATG CGCACAGGCT TATCGAAGAA TTCATGATCG CGGCCAACGA GGCCGTGGCC
CGCCACCTGC GCGACGCGGA CATTCCCTTT CTTTACCGTG TTCACCCCGA CCCCGATCCC
GAAAGGCTGG AAAGCCTCTT TGACACGCTG GCAGCCACAG GCATTGAAAA CCTGCCGCCC
AAGCCCTCGC CTGCCGCCAT GCAGGGCATT CTTGCCGCTG CCCAAGGGAC GCCACAGGAA
TTCCTCGTCA ACCGCCTCTG TCTGCGCGCC ATGCCCCAGG CCCGGTACAT GCCGTTTAAC
GAAGGGCATT TTGGCCTGGC CTCCACGGCA TACTGCCACT TTACCTCGCC CATCCGCCGT
TATGCCGACC TGCTCACGCA CAGGGCGCTC AAAATGTCGC TGGGGCTGGA TTCGGGACCA
CTGCCTGCCG GTGAAAAGCT TTTGCGTATC GGCGACCAGA TCAACCGGCG CGAGCGGGCG
GCCATGGCCT GCGAACGCGA GATGGACCGC CGCCTTGGCT GCCTTGCCCT GTTGCCCCGC
GTGGGCGAGC ACTTCAGCGG TATTGTGGCG GGCGTGACGG ACTTTGGCGT TTTTGTGGAG
CTGGAAGCCA TGCCCGTGGA AGGCATGATT CGCGTGGAAG ACCTGGGCGA TGACTGGTAC
GACTTTGACG CCCGCCTCAT GAGCCTTGTG GGGCAACGCT CTGGCGTACA GTGGCGCATG
GGCCAAAAGC TTGAGGTCGC CCTGTCTGAA GTGCATCTGG GCCGTCTTGA AATCCGCCTC
ATGCCGCTGG AACTGCCCAA GGGCATCGGC GGGCGCGGGG CGCGCAGTCC GCGCGGTTCG
CGCGGCAGAG GCTCGCCTGC CGGCCGTGCT GCGGGCGGCC GCAAAGGCTC CAGTTCCGGC
TGGAAGCTGG TTTCCCCCGG TGACGGCGAA AGCCGCGGCA GAAACGACAA GCCCGCTAAA
AATGGCAAGA ACGGCAAAAA GAGCGGCGCG GGCAAATCGG GCCACTCCGG TCAGCCTGGC
GGTCAGTCGG CCCGCAAGGG CAAAAACGGC ACGGGCACAC CCGCAAAATC CGGCAGGCCC
GTCAGAAGCG GTAAAAAAAC AGCAGGTAAG CGCGGCTGA
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| Protein sequence | MKKQKKLRGT TTASAPASGG FPSTEELLQT LAAQNRPMRL DGLLRVLGLA RRERKELEAA
LDDLERQGSA LRLRGGLWTR PENLKSITGR FSALREGAGF VTPMRLAADD EQESPRWQFS
GGKDIYIPSA QNGGAWHQDL VRVALSPGAQ RGPSPEGRIV EIVERGLKEV PAHVVHRHGN
SLFCRPADSR LPADFNVELP AGSEAPAQGT LVLLAPLKPL ASDLWSATLL GNYGREDDVA
VQEELVKLNH EVPRDFPAGA LAEAEALPGE ADFKGRRDVR DLALVTIDGA DARDFDDAVH
VEEQPGGKGW VLRVAIADVS HYVRPRGRGC PGALDAEALS RGNSWYFPRS VEPMLPEVLS
NGLCSLRPHV NRLAVLAEIP FTAAGKPGKP RFSEVVMRSA ARLTYDQVKA CILDKDEAAL
AELRTEERGE EVLAMLDKAF ALYTVLRDVR RQRGTLDFDL PEAQSRLDDL GRVVWLGHRE
RNDAHRLIEE FMIAANEAVA RHLRDADIPF LYRVHPDPDP ERLESLFDTL AATGIENLPP
KPSPAAMQGI LAAAQGTPQE FLVNRLCLRA MPQARYMPFN EGHFGLASTA YCHFTSPIRR
YADLLTHRAL KMSLGLDSGP LPAGEKLLRI GDQINRRERA AMACEREMDR RLGCLALLPR
VGEHFSGIVA GVTDFGVFVE LEAMPVEGMI RVEDLGDDWY DFDARLMSLV GQRSGVQWRM
GQKLEVALSE VHLGRLEIRL MPLELPKGIG GRGARSPRGS RGRGSPAGRA AGGRKGSSSG
WKLVSPGDGE SRGRNDKPAK NGKNGKKSGA GKSGHSGQPG GQSARKGKNG TGTPAKSGRP
VRSGKKTAGK RG
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