| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2658 |
|---|
| Symbol | |
|---|
| ID | 7272480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2785388 |
|---|
| End bp | 2786908 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643571249 |
|---|
| Product | seryl-tRNA synthetase |
|---|
| Protein accession | YP_002467645 |
|---|
| Protein GI | 219853213 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0172] Seryl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00415] seryl-tRNA synthetase, Methanococcus jannaschii family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0089078 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.858141 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTAC GATTCGCATT GACGGCTGAT CTTTCCTTCA GCGGGGAGAT ACCCGGGGAA
GCAGCCGAGG CGGTAGAGAA GACAGTCACC GACTCAAACA CAGTGATGTT CCGGCGGGGG
GTACCTAAAG GGGCGACTGA TGATGAGATC GGGAGAATCA CCGACTGGAA GATCGAGGGG
AACACCCTCT CGCTGACCAT TGAGAGCGGG CCGTACACCC GTGTTCATGA CGCCCTCTTC
CGGTTTAGAA AACAGATCAC GGCCACCCTC GGCAGGTTCC GGCTCGGTCT CCGGGATATT
CAGGTGACCG GGTATGAGAT CACGCTCACT GGTCCGGTGC CGGAGGGGCT GAAAGTCCCG
ACGCTACCGT TCATCAGCAG CGCCGAGGTG ACCGCAGAGA AGATCGAACT CTCGCTGCAG
GTCAGTGCCA CCGACCTCGA ACAGAAGATC CCAGACCGGA TCGTGAAACT GATCGAGGAG
AAGATGGAGG CGCTGACCTA TGGCGGCAAG GGCGAGCACT GGGAACTGCT GTACGAGAGC
GAGAAGAAGG AACGCTTCTT CAATGGTGAT CCGACCGCTG AGATGATCGA ACGTGGCTGG
ATCAAGCATG CTCTGTCACG TGGTCAGTGG ATCCATGGTC CCCAGTCGGT GCAGCTCTTC
CGGGCCTTCG AGCAGATCGT GATGGAGGAG ATCATCACAA CCCTCGGGTT CACTGAGATG
ATCTTCCCAA AGCTGGTTCC CTGGGAGGTC TGGGAGAAGT CCGGGCACGC CAAAGGTGTG
TACCCAGAGA TCTACTACGT CTGCACCCCC AAGACCCGTG ATCCAGCGTA CTGGGAAGAG
GTCGGCGATT ACTTCAAGGT GACCGGCAAG GTGCCGATCG ATATGATCCG GGAGAAGGTC
GACGGTCCGA TCGGGGGTCT CTGCTATGCG CAGTGCCCAT CCTTCTGGCC GTTTGTCCAG
GGCCAGACCC TGGCCAGCGA CTGCCTCCCG ATCAGAATAT TCGATCGGAG CGGAACCTCC
CATCGGTATG AGAGCGGCGG GATCCACGGG ATTGAGCGTG TCGACGAGTT CCATCGGATC
GAGATCCTCT GGCTCGGGAC CCCCGAGCAG GTCGTCGAGA CGGCCGATAA ACTCCATGCC
GCGTATAAGC ACCTCTTCGA TGAGGTCCTG AACCTGGAGT GGCGTTCAGC GAAGGTCACC
CCCTGGTTTA TGGCACAGGA AGGGATGCTC GATGGCGAAG GAGTGAACGA GCGGATCGGA
ACCACCGACT ACGAGGCCAT TCTCCCGTAC AGTGACTCAT GGCTGGAGTT CCAGAACGTC
TCGGTGAACG GGGACAAGTA CCCGAAAGGC TTCAACGTCA AGGTGCAGAC CGGAAAGGAC
TGCTGGTCAG GGTGTTCAGG CATCGGGCTT GAGCGCTGGA CTGCGGCCTT CCTTGCACAG
AAAGGGTTTG ATATGAACAA CTGGCCAGAG CGTGTAACTG CCCTGGTTGG TGAGCAGAAG
GAACTCTTCA AGTTCCTCTA A
|
|---|
| Protein sequence | MFVRFALTAD LSFSGEIPGE AAEAVEKTVT DSNTVMFRRG VPKGATDDEI GRITDWKIEG
NTLSLTIESG PYTRVHDALF RFRKQITATL GRFRLGLRDI QVTGYEITLT GPVPEGLKVP
TLPFISSAEV TAEKIELSLQ VSATDLEQKI PDRIVKLIEE KMEALTYGGK GEHWELLYES
EKKERFFNGD PTAEMIERGW IKHALSRGQW IHGPQSVQLF RAFEQIVMEE IITTLGFTEM
IFPKLVPWEV WEKSGHAKGV YPEIYYVCTP KTRDPAYWEE VGDYFKVTGK VPIDMIREKV
DGPIGGLCYA QCPSFWPFVQ GQTLASDCLP IRIFDRSGTS HRYESGGIHG IERVDEFHRI
EILWLGTPEQ VVETADKLHA AYKHLFDEVL NLEWRSAKVT PWFMAQEGML DGEGVNERIG
TTDYEAILPY SDSWLEFQNV SVNGDKYPKG FNVKVQTGKD CWSGCSGIGL ERWTAAFLAQ
KGFDMNNWPE RVTALVGEQK ELFKFL
|
|---|
| |