| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2205 |
|---|
| Symbol | |
|---|
| ID | 7270290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2347104 |
|---|
| End bp | 2348504 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643570819 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002467224 |
|---|
| Protein GI | 219852792 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.112158 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATGC GTACTACCTG TAGTGATAAA CAGGAACTGC GGGAGTATGT GGTGCTCGGG
ATTGCAGTGC TGACGATCAT CTTTGCCAAC CTGATCCTGT ACATCTCAGG GAACGAACTG
GTGGTGATCA TCACCAACCT CTTCTACCTT TTCATCGTGC TGATCTCGTT CTTCTCGCCC
CAGCGAGGGA TCATCATCTC GACACTGGCA TCGTTCTGTT TTCTGGGGCT GATGTACATC
GTCTCCCTGC AGATCCCGGT CCAACCGGTG CCGACCCTGA TGCAGTTCTT CGTCTTCATC
TCTGCCGGAA CGATCGTCTC TCACCTGGCA GACCGGATCC TGAAAGAGGA GTTCAAGTAT
CAAACCATCC TGACCGAGGT AGAGATGGGG ATCCTGCTGA TCGATGAGGC GGCCAAGAGA
GCAGAACTGA ATGAAGCGGG GGCGAAACTG ATCGGTTACC CGGAGAAGAC AACCCTGGAT
TATTCTTCGA TCGCCGCGAT CTGGGATGAC CTCTCAACGT GCGGTGACCT GGGGGGGCGG
ATCACTATTG AGGGTTCGAT CGCCCACCAC CACACCCGGT TCCGCCGGCT CGATGGCAGC
GAGGGCTGGG TGATCCTGAA TGGACACCGG CTTCCTGATG GGGCGCTGCT GATCACGTTT
GCCGATATCA GCCGACAGAT GGAGGAGCAG GATCAGATCA GACGGATGCA TGAGGAGGAG
CATCTGCTGC TCGATATCGT CACCCATGAT CTGAACAATA TGAACATGGC AGCCCTCGGG
TACGCCGAAC TGGTCAGTAT GGACCAGAAA GAAGAGAGTA AGGCAAGCGA TCACCTGGTC
CGGACGATCC AGAAGGGGAT TGAGATCATT CGGAACGTGA ACACGTTACG GCGGGTTCAT
GAGGAGCATC AGGCCCGTCT CCGACCGATC TTCATAGAGA ATATCATCAA ACAGGAGATC
ACCCGTCTCG GTGAGCCCGG GGTCAAGTTT GAGGGGACCC ACGCCGTGGT CTGTGCAGAC
GACCTGATCG CTGAGGTCTT CACCAACCTG ATCGGGAACA GCCTGAAGTT CGGTGGGGAT
GGGGTGCAGG TGACGATCCG TGCTGTCGAG GAGGAGGACC GGGTCTGGGT GTCCATCACC
GATAACGGCC CCGGGATCCC ACTCTCCCAG AGGTCGACCC TCTTCTACCG CTACTCGCGG
GGTCTCGGCG TGAAGAGCGG GCGGGGTCTG GGGCTGTACA TCACCCGGAT CCTGATCGAA
CGCTATGGCG GAACGATCTC GGTTACAGAC CGGATCGAGG GGGATCCTGC ATCCGGGACA
ACGATCTCGT TCACGTTGAA GCGGTACCTC CGGGACTCCC TGGTCCCGGG GTCGGATCTA
GACGGTTTTG GAGTGGAATA G
|
|---|
| Protein sequence | MEMRTTCSDK QELREYVVLG IAVLTIIFAN LILYISGNEL VVIITNLFYL FIVLISFFSP
QRGIIISTLA SFCFLGLMYI VSLQIPVQPV PTLMQFFVFI SAGTIVSHLA DRILKEEFKY
QTILTEVEMG ILLIDEAAKR AELNEAGAKL IGYPEKTTLD YSSIAAIWDD LSTCGDLGGR
ITIEGSIAHH HTRFRRLDGS EGWVILNGHR LPDGALLITF ADISRQMEEQ DQIRRMHEEE
HLLLDIVTHD LNNMNMAALG YAELVSMDQK EESKASDHLV RTIQKGIEII RNVNTLRRVH
EEHQARLRPI FIENIIKQEI TRLGEPGVKF EGTHAVVCAD DLIAEVFTNL IGNSLKFGGD
GVQVTIRAVE EEDRVWVSIT DNGPGIPLSQ RSTLFYRYSR GLGVKSGRGL GLYITRILIE
RYGGTISVTD RIEGDPASGT TISFTLKRYL RDSLVPGSDL DGFGVE
|
|---|
| |