| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2176 |
|---|
| Symbol | |
|---|
| ID | 7270261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 2314011 |
|---|
| End bp | 2316197 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 643570792 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002467197 |
|---|
| Protein GI | 219852765 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4485] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCATC CAAAAAAATT TCCAATTGTT AGAATTATTC TCCAATATAA AGAATTTATA
TTCCTATTAG GGCTATCTCT TGTTTTCTTT TATAAAATTT TTCTTCATTC CGATCAGATT
ATTTTCCCTG CAAAAGATGT AATAGCACAA TATTCTTTCT GGAGATCTTT CTTTGCAACG
AATATTCTAA ATGGATCCGG TCTCCCTCTC TGGAACCCGT ACGTTTTTTC TGGAACACCC
TTCATAGGAA ATCCTTTATC CAGCATGTTC TATCCCATTT CATGGTTTTT TGTCTGCTTC
AATCCTGATA CCCTCTTTGG ATACCTCTTT CTTCTGGATA TTTTTTTAAT TGGAGCATTC
ACATACATTT ATGGTCGAAC AATCAATCTA GACAAATATT CGGCACTGAT ATCTGCAGTT
ATTTTTATGT TCTGCGGAGC GATTACCCCC AGAATTTTTG CCGGCCATCT TGCAAATCTC
GATGCAATCG TATGGTTCCC ATTGGCTCTG ATATTCATTG AACAGACATT TAAAAGAAGC
AGGATTGTAT ATAGTTTTCT CGCTGGTATT GCATTAGGAC TGATGTTCCT CACTGGAAAT
ATCCAGTTTG CATTGTATGG AGCATTTACG GCACTACTCT ATCTCGTAAT CCGAACTATT
GTAATAGATG ATTTGCCCAC GACAAGACAA AAAATAACTC ATATCGTGGT TGTTGTTTTT
TTATCAATTT GTATTTGTGG TCTGATATCA GCCGTTCAAC TTCTTCCAAC ATGGGAATTT
TCACATCTCT CCAGTAGAGG AGAGGGAGTA AGTTACGATT TTTCTACAGA GATATCTCTA
CCGGTACAAA ACATCTTCAC CTTGTTTGTC CCAGATTTAT ATGGACCTCC AACGACCACT
CAAAATTATT GGGAATTTTC ATTTTATATA GGAATTTTGC CGTTAATCTT AATTATAATT
GGTCTCATGT CTCATCGGAC AAAATACACC GGAATTTTCT CATTTTTTGC TATATTTTCA
CTCCTATTTT CTGCTGGTAG ATTTTTTCCA ATATATAGTT TATTTTTCCA ATTTATTCCT
GGGTTTTCCA TGTTTCAGAT TCCATCAACA TTGTTATTCG TATTTTCTTT TTCATTATCG
ATCCTCGCAG GGTTGGGATG TGACTTTATA ATCAACAAAA GCCACGGTTT TCATTCCAGG
TATTATGATC TAACAAAAAA TATTCTGATG AATACTGCCT TGTTTTCCAT GATGATAGGC
ATTTTTGTGA TGATCATAAT TTCAACATTT TATATACTAT ACAAAAAAGT CGGCGGCATA
TTATATGTCT GGAATATGCT TCACATTACA GATATCGGGA CTATTTACCT AATAGTAGAT
TTTCTTGTGT TTATCTTCTT TTTTTATGTC AGCGTTCTTG TGATTTATAA TAAGGATGCC
TTCAAAGATC CAAGATTGTT TAAAATTATA TTGACTACAA TAATCGTTGC AGATCTATTC
CTATTTGGTG CGAGATTTAT TGACACGAAG GACCCAAATG AAGTATTCAA AAACCCTGAT
TTTATTTCAA TTTTTAAAAG CGAAGGAGAC AGTTATTTTC GAATTTACGA TGAAACCGGA
ATAATTGACC AGAACATAGC TCTCCGCAAT AAACTGTATC TCGTAAACGG TTACGATCCA
ACGTATTTAA AGAGATATCA ACAATACTAT CTCAGATCAC AATCAGGGGA TATCAATACA
ACATATAGCT GGAAACAGGA AAACGGAATT GAAGATCTCG ATATTTTAAG ATCTCTCAAT
GTGAGGTACA TAATTACCTC ACAACCTCTA AATCTAACAG GAATTGAGAT TATTCAAAAT
AAATCTCCTT TTATCTACCG GTTAAATTAC ACTTATCCTA GGGCATTTCT CGTCCCAGTT
TCCGAGTTCA ATTCAACAAA ACCGGATAGG CTCATCCCTG CTCATATTAT TGATTACTCC
CCCAATAGGA TCACAATACA TACCAACAGT TCTGAAGATG TGTATCTCGT TACGAGTGAA
ATCTACTATC CTGGATGGAG TGCCGAAGAT GAAGCCTCGA AAATAGAAAT AGAAAAATAT
CAGGGCATTT TCAGATCAGT TCGACTCAGT CCCGGAGAAC ATAATATCTC GTTTTCCTAT
TTCCCAAAGA TTCTCACATT CGCCTGA
|
|---|
| Protein sequence | MFHPKKFPIV RIILQYKEFI FLLGLSLVFF YKIFLHSDQI IFPAKDVIAQ YSFWRSFFAT
NILNGSGLPL WNPYVFSGTP FIGNPLSSMF YPISWFFVCF NPDTLFGYLF LLDIFLIGAF
TYIYGRTINL DKYSALISAV IFMFCGAITP RIFAGHLANL DAIVWFPLAL IFIEQTFKRS
RIVYSFLAGI ALGLMFLTGN IQFALYGAFT ALLYLVIRTI VIDDLPTTRQ KITHIVVVVF
LSICICGLIS AVQLLPTWEF SHLSSRGEGV SYDFSTEISL PVQNIFTLFV PDLYGPPTTT
QNYWEFSFYI GILPLILIII GLMSHRTKYT GIFSFFAIFS LLFSAGRFFP IYSLFFQFIP
GFSMFQIPST LLFVFSFSLS ILAGLGCDFI INKSHGFHSR YYDLTKNILM NTALFSMMIG
IFVMIIISTF YILYKKVGGI LYVWNMLHIT DIGTIYLIVD FLVFIFFFYV SVLVIYNKDA
FKDPRLFKII LTTIIVADLF LFGARFIDTK DPNEVFKNPD FISIFKSEGD SYFRIYDETG
IIDQNIALRN KLYLVNGYDP TYLKRYQQYY LRSQSGDINT TYSWKQENGI EDLDILRSLN
VRYIITSQPL NLTGIEIIQN KSPFIYRLNY TYPRAFLVPV SEFNSTKPDR LIPAHIIDYS
PNRITIHTNS SEDVYLVTSE IYYPGWSAED EASKIEIEKY QGIFRSVRLS PGEHNISFSY
FPKILTFA
|
|---|
| |