| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2096 |
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| Symbol | |
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| ID | 7271573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | - |
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| Start bp | 2222114 |
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| End bp | 2223382 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643570707 |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_002467117 |
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| Protein GI | 219852685 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGAT CCGACTATCC GTTGGAGCAG GCGCTCGGGA TGTGCTGGTA TGCGAGCAGC
ACCGAGGGGG TCGGGGGGCG ACTCCGGACC ACCGCTGAGG ATTTCGTAGT CGAGGAGGTA
CCGGACCTCC CGGGTGGGGA GGGGCCATTC CTGCTCTGCA CCCTGACCAA GCGGAACTGG
GAACTGCAGC GGGCGGTCAA GGAGATCGCC TCCAGCCTTG GTATCAGCCA CAAACGGATC
GGGTGGGCCG GGACCAAGGA TAAACATGCG GTCACCACCC AGACGATCTC GCTGTATGGG
GTCACCCCTG AGGAGATAGC TTCAGTCTCG CTCGGGGATC TCTCACTGAC CGTGATCGGT
TCGGCCAACG GGGGGCTCTC GCTCGGTTCA CTCATCGAGA ACCGGTTCAC GGTGGTGATC
CGGGACTGCA TCGCGGAGGA CCTCGATCAG AGAGTGCAGG AGGTGACACA GGTCTGCAGT
CAGGGGATCC CGAACTATTA CGGGGTCCAG CGGTTCGGGG TGATCCGTCC GATCACCCAT
ATCGCCGGCG AGTACCTGAT CCAGGGAGAT TACGCCGGTG CGGTCGGAGC CTATGTCGGA
AAGAGTTCGC CCGACGAGGA TCCGGTTGTT GCGGCGGCAC GGGACGAGTA CCTGGAGACC
CGGGATCCTC AGTTGGCCCT CCACCACCTG CCGGTTCACC TCCGGTACGA ACGGGCCATG
CTCCACCACC TCACCAACCA TCCGGATGAC TACCTGGGTG CACTGCAGGC CCTTCCCCCA
AAACTCCTCT CGATGCTGGT CAGTGCATTC CAGTCCTACC TCTTCAACAT GGTCCTCTCA
GCCCGCCTTG AGGCAGAGTT AACGCTGATG GATCCGATCC CGGGCGATCG GCTCCACTTC
ACCAATGGCA GGATCGATAT CGCCACTGAG GCGAACCTGG CCACGGCGAC GATGCATATC
CGGCGGGGCC GGTGCAGGAT CGGCCTCTTT GTGCCCGGCG CCGAACCGTT CACCCCGCAG
GGGAGGATGG ACCAGATGAT GGAGGATCTG TTAAAAGAGC ACCAGATCGA TCGGGTATCC
TTCAAACAGG CTGAAACTGT CGTTAAAACA AGGTTCAGCG GCGCATCCCG GCCGATCGCC
CTGACCGCCA CCGTCGACGC AGTGGTGGAG GAGAACGACC TGACCCTCAG GTTCCCCCTT
CCCCCCGGCC ACTATGCGAC GACGGTCTGC AGGGAGTACA TGAAGAGTGA CCCCCTGATG
ATGATCTGA
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| Protein sequence | MKRSDYPLEQ ALGMCWYASS TEGVGGRLRT TAEDFVVEEV PDLPGGEGPF LLCTLTKRNW
ELQRAVKEIA SSLGISHKRI GWAGTKDKHA VTTQTISLYG VTPEEIASVS LGDLSLTVIG
SANGGLSLGS LIENRFTVVI RDCIAEDLDQ RVQEVTQVCS QGIPNYYGVQ RFGVIRPITH
IAGEYLIQGD YAGAVGAYVG KSSPDEDPVV AAARDEYLET RDPQLALHHL PVHLRYERAM
LHHLTNHPDD YLGALQALPP KLLSMLVSAF QSYLFNMVLS ARLEAELTLM DPIPGDRLHF
TNGRIDIATE ANLATATMHI RRGRCRIGLF VPGAEPFTPQ GRMDQMMEDL LKEHQIDRVS
FKQAETVVKT RFSGASRPIA LTATVDAVVE ENDLTLRFPL PPGHYATTVC REYMKSDPLM
MI
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