| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1886 |
|---|
| Symbol | |
|---|
| ID | 7272703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2001685 |
|---|
| End bp | 2002659 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643570501 |
|---|
| Product | NMD3 family protein |
|---|
| Protein accession | YP_002466914 |
|---|
| Protein GI | 219852482 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1499] NMD protein affecting ribosome stability and mRNA decay |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0860054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA CCGAACCGTT CACCTGCGAC GAGCGGGTCA TTCATACCTT CTGCCCATCC
TGCGGAGCCG TGAAGAGCAA CGGCAAGGTC TGGAGTGACA GCGAACGTGA ACGCGAAGAG
GTCGATCGTG AACTCGCCAT GAAGGCCGTT CATCTTCACC CTGACTTTCA GGATGGAAGT
TTCGATCTCC GGGTCAGGGA GATCTCGGTG AACCGCTCTC TGGCGGTGAT CGGGATCACC
GGCACGCTGT ACGGGTACCC GGTCCAGGGC GAGTGCAGGG TGGGGATCAG CTGGCATAAG
GAGCAGTGCG ACCGGTGCAA CCGGATCAGC GGCAGTTACT ATGAGGGGAT CGTTCAGATC
CGGGCCCAGG GCCGGCACCT GACGCCGTAC GAACAGGAGG CCGCGGTCCG GCTGGCCACC
TCTATTGAGG ATGAACAGCT GGAATCCGGC GACCGTCTCT CCTACATCTC GCAGCTCGAA
GAGACCCGTG ACGGTGTCGA TGTGATCGTC GGATCGCAGC ATATCGGGAT CCTGATCGTA
CAGGCGCTGA TAAATCAGTT CGGCGGTCGG TATACGACCC ACCCAAAGCT GGTCGGAGAG
AAGGCCGGCC GGGCTCTATA CCGGATCACG TACCTGGTCA GGCTTCCCCG CTATCGACAT
GGCGATGTGA TCGACGTTGC CGGCCAGTAC TTCCAGGTGC AGAGTTCTGA GGGAAAACGG
GTGCAGGTCA CTGACCTGCT GAACGGTAAG GTCCGGACGA TCCGGGAGGA TGAGATCAAC
CGCGAGATCG GCAACACCAG TACTGCCATC GAAGCGCTGG TAGTCTATGC TGATGGTGGT
GTCATCGGAC TGATGGACCC GGACACCTGC ACGACTCACG AGGTTCCGCT GGTGGACTGG
CGGAGGCAGC GGATCGAGAC CGGGGATCAG GTCAGGGTTC TCCGTGACCA CGACCAGCTC
GTCCTCCTCG GGTGA
|
|---|
| Protein sequence | MKETEPFTCD ERVIHTFCPS CGAVKSNGKV WSDSEREREE VDRELAMKAV HLHPDFQDGS
FDLRVREISV NRSLAVIGIT GTLYGYPVQG ECRVGISWHK EQCDRCNRIS GSYYEGIVQI
RAQGRHLTPY EQEAAVRLAT SIEDEQLESG DRLSYISQLE ETRDGVDVIV GSQHIGILIV
QALINQFGGR YTTHPKLVGE KAGRALYRIT YLVRLPRYRH GDVIDVAGQY FQVQSSEGKR
VQVTDLLNGK VRTIREDEIN REIGNTSTAI EALVVYADGG VIGLMDPDTC TTHEVPLVDW
RRQRIETGDQ VRVLRDHDQL VLLG
|
|---|
| |