| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1729 |
|---|
| Symbol | |
|---|
| ID | 7271292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1799335 |
|---|
| End bp | 1799967 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643570343 |
|---|
| Product | siroheme synthase |
|---|
| Protein accession | YP_002466759 |
|---|
| Protein GI | 219852327 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1648] Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) |
|---|
| TIGRFAM ID | [TIGR01470] siroheme synthase, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGACC TCTCCGGCCG GAGTGTACGG ATCTTTGGGG GGGGGGAGGT TGGAGCACGG
AAGGCGGCCT TCTTTGCAGA CGAGGCGGCA GTGCAGATCT TCAGTCGTTC ATTCTCTTCC
CGTTTCTCTT CCCTGCCGGT GACATCACAG GTTCTCGATG TTGAACTGCT CGATGATCAG
ACCCTTGGTG ACCTGATCAA GGGGGCATTT CTGGTAGTCG CAGCGACATC TTCCCCCGAT
CAGAACAATC GGATCGGCAG GATCTGCAGG GACCTGGGTG TGCTCTTCAA CAATGCAGAT
GGTGAACAGG GCGATCTTCA GTTACCGGCG GTGGCCAGAG GTGAGCAGTA CCTGATTGCG
GTTTCTACCG GTGGGAGCAG CCCGGCGGTG GCCCGTTATA TCAGGGAGAC GATTGAACGC
GAGGTGCCCT GTCTTGATCG GATGATTCTG CTTCAGCGTG AAGTCCGTGG AGCACTCAAA
CAGTTGCCCC TCTCTTCAGA CGAGCGGCGA CGTATCCTTT CAGCGATCCT CCGTGATTCT
GCAGTGAACA GTGCCCTGAA CACCGGTGTC GACCAGGCCG TTGCAGTGGT GTGGACACGA
TACCTGCAGG GGAGGTCTCC GGATGGCTGT TGA
|
|---|
| Protein sequence | MLDLSGRSVR IFGGGEVGAR KAAFFADEAA VQIFSRSFSS RFSSLPVTSQ VLDVELLDDQ
TLGDLIKGAF LVVAATSSPD QNNRIGRICR DLGVLFNNAD GEQGDLQLPA VARGEQYLIA
VSTGGSSPAV ARYIRETIER EVPCLDRMIL LQREVRGALK QLPLSSDERR RILSAILRDS
AVNSALNTGV DQAVAVVWTR YLQGRSPDGC
|
|---|
| |