| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1700 |
|---|
| Symbol | |
|---|
| ID | 7271263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1761827 |
|---|
| End bp | 1762945 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643570315 |
|---|
| Product | Radical SAM domain protein |
|---|
| Protein accession | YP_002466731 |
|---|
| Protein GI | 219852299 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0535] Predicted Fe-S oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.216048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTATTACC ATCTGATCTT GACCGACAAC TGCAATCTCT GCTGCTCGTA CTGTAGAGGA
AAGGCGTTTG AAAGCCTTGA GGGTGAGGAT GAGTTTGGAG AGATAGATTG TGCGCTCCCT
GTTGAACTGG ACATCGACCT TGATAAACTC TATTCGTTTC TGGCCCGGGA TCCAGAGGCG
GCCCTGACCT TCTATGGGGG TGAACCACTG CTCAGGAGCG ATCTCATCGA GGAGATAGTG
CACCATGCCC CGGTGTCGAA GTTCCTGCTG CATACCAATG GTGTACTGTT GAGCCAGTTG
AACCCGGGAG TGGTGGCTGA CCTTGATACG ATCCTGGTCT CGATCGATGG TCCGAAACCT
CTGACCGACC TGCATCGGGG CGAGGGAACC TTCGATAAGG TGATATCTGC AGTACAGGGA
CTCTCTGCAT CTGGATTTAC CGGCGAATTG ATCGGGCGGA TGACCGTCGA CGAGCAGACA
GATATCTATG CCGCGGTCAG GGGACTTGCA GAGAATTCCG GCTATCCATT CACCTCGCTC
CACTGGCAAC TCGATGCCAA TTTCTCGCAC GACTATCAGG ATCGGGATTT TGTCCGCTGG
GTCGAGTCTT CGTACAACCC TGGGATCAGC AGACTGGTTG CGTACTGGAT CAGGATGATG
CGTGAGCAGG GGCAGGTGCT CAGGTGGTAT CCGTTCCTCG ACACGATGGA AGACCTGCTT
CTTGGGCGGG CAAGTCTTCT TCGGTGCGGA TCGGGGTATG CGAATTACAC GATCCTGACT
GATGGATCGA TCGTTCCCTG TCCGGTGATG ATCGGGATGA AACAGTATTA CCTCGGGAAT
ATTGCGACCG TCGACCCAAA AGGTTTGAAA CAGGTGATGG TCGGTGGTTC CTGCGGAGAC
TGTTCAATCT CAGAATTCTG TGGCGGACGG TGTTTGTATT CTAATATCAT TGCTCCATGG
CCGGAGGAAG GGAGAGCGGT GGTCTGTGAC ACGGTTCACC ATCTTTACAC CACGCTGGCA
GCAGCGCTTC CTGAAGTCCG GGAGATGATT CAGGAGGGAC TCATCACGCT GACTGACTTC
TGTCATCACA AGTTCAATGG CTGTGAGATC ATCCCCTAG
|
|---|
| Protein sequence | MYYHLILTDN CNLCCSYCRG KAFESLEGED EFGEIDCALP VELDIDLDKL YSFLARDPEA
ALTFYGGEPL LRSDLIEEIV HHAPVSKFLL HTNGVLLSQL NPGVVADLDT ILVSIDGPKP
LTDLHRGEGT FDKVISAVQG LSASGFTGEL IGRMTVDEQT DIYAAVRGLA ENSGYPFTSL
HWQLDANFSH DYQDRDFVRW VESSYNPGIS RLVAYWIRMM REQGQVLRWY PFLDTMEDLL
LGRASLLRCG SGYANYTILT DGSIVPCPVM IGMKQYYLGN IATVDPKGLK QVMVGGSCGD
CSISEFCGGR CLYSNIIAPW PEEGRAVVCD TVHHLYTTLA AALPEVREMI QEGLITLTDF
CHHKFNGCEI IP
|
|---|
| |