| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1578 |
|---|
| Symbol | |
|---|
| ID | 7271123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1624458 |
|---|
| End bp | 1625804 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643570192 |
|---|
| Product | Periplasmic component of the Tol biopolymer transport system-like protein |
|---|
| Protein accession | YP_002466614 |
|---|
| Protein GI | 219852182 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.486208 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGC GAATATCGAT AATAATTCTC CTCTGTGCCC TCTGCAGTCT CCCGCTGATG
GTGGATGCAG GGAGTACCCT CGAGGCAAAT CAGAGAACAA CCGCGATCGG GGTGGCAACC
ATCGCCCCCG AAAATTCTTC CGGTTCCGGA CCATCAGAAG CCCTGATCAG CCCTCAGATC
AGCAGTTACC AGAGTAATCC AGCCGTATCC GGGGATCATG TCGTCTGGGA GGACTTTCGA
AACGGCGTCT GGATGAATAA CCCGGATATC TACCAGTACA CGCTCAGTCA AAAGCAGGAG
ACGGCAGTCA GCACCGATCC CTCCTTTCAG GAGTATCCGG CGGTCGATGG GGATCGGATC
GTCTGGGAGG ATCAGCGGAC GGGGCAATTC GGGGATATTC GTCTCTATGA TCTGAAGACC
GGGACGGAAT CTGTCGTCTG CTCCAACGAG TTTGACCAGA CCAATCCGGC TATATCGGGG
GATATCGTCG TCTGGCAGGA CAGCCGGAAT GGAAACTGGG ATATCTACGG CTACGATCTC
GCAACCGGCG GCGGGTTCTC AGTCTGCACC GCTGATGGGG ACCAGCAGTA TCCGGCGATA
TCAGGGAACA CCATCGTCTG GCAGGATAAC AGAAATGGGA ACTGGGATAT CTATGGCTTT
GACATCGCGA CAAAGACCGA GTTCCCAATC TGCATCGCAG GTAAAGACCA GCAGTATCCG
GCGATATCAG GGAACACCGT CGTCTGGCAG GACAACCGGA ACGGAAACTG GGATATTTAC
GGTTATGATC TCGCCACAAA GACCGAGTTC CAGGTGACCA AAGACCCGGC CGACCAGATT
CTGCCGGCAG TCGACAGCAA TCGGATCGTC TGGGAGGATC ATCGGGACAC CCTCTCCGGA
ATTTATCTGT ATGACCTGAC CAACGGGACC GAGTCCCGGA TCAGTTCTTC AGGCACGGCA
CAGCATAACC CGGCCATCGC TGGAAATAAT GTCGTCTCTG AACTGGAGAG GAGTGGGGGG
GTTGGCCGAG CTATCAACCT GATCACTCTG CAGAACTCCG GTAGTGGCAG TGTTGCATCT
TCAGTCACCC CGATACCATC TATCGTCCAG ACCCCGACCC CGACGATTAC GGTCGGGACA
TCACCGTTCG TCACGGGTGT CACCCCATCT GCCTCTGACT TCGTTCAGGG GAGGCAGTAT
GTGATCGGGG CCGCGGGAAG TTCGATCTTC TCGGACCAGA CATCGACGGT CTCCGGGATT
ACGACCGAAT CCGCATCGAA CTCCGGTAGC ACCCGTTTCA CGGGAATCTC CACCTTCAGC
CGGAGTTACC CGAACTGGGG AAGATGA
|
|---|
| Protein sequence | MMKRISIIIL LCALCSLPLM VDAGSTLEAN QRTTAIGVAT IAPENSSGSG PSEALISPQI
SSYQSNPAVS GDHVVWEDFR NGVWMNNPDI YQYTLSQKQE TAVSTDPSFQ EYPAVDGDRI
VWEDQRTGQF GDIRLYDLKT GTESVVCSNE FDQTNPAISG DIVVWQDSRN GNWDIYGYDL
ATGGGFSVCT ADGDQQYPAI SGNTIVWQDN RNGNWDIYGF DIATKTEFPI CIAGKDQQYP
AISGNTVVWQ DNRNGNWDIY GYDLATKTEF QVTKDPADQI LPAVDSNRIV WEDHRDTLSG
IYLYDLTNGT ESRISSSGTA QHNPAIAGNN VVSELERSGG VGRAINLITL QNSGSGSVAS
SVTPIPSIVQ TPTPTITVGT SPFVTGVTPS ASDFVQGRQY VIGAAGSSIF SDQTSTVSGI
TTESASNSGS TRFTGISTFS RSYPNWGR
|
|---|
| |