| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1553 |
|---|
| Symbol | |
|---|
| ID | 7271098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1602767 |
|---|
| End bp | 1604047 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643570167 |
|---|
| Product | elongation factor 1-alpha |
|---|
| Protein accession | YP_002466589 |
|---|
| Protein GI | 219852157 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG5256] Translation elongation factor EF-1alpha (GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00483] translation elongation factor EF-1 alpha
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATG ACAAGCCTCA CATGAATCTG GCCGTTATCG GACATATCGA CCATGGAAAG
TCAACCACTG TTGGACGGTT GATGTTTGAG ACCGGTGCAG TACCGGCGCA TATCATTGAG
AACTTCCGTA AGGAAGCAGA GTCGAAGGGA AAGGGTTCCT TTGAGTTTGC ATGGGTTATG
GATAACCTGA AGGAAGAGCG GGAGCGGGGT ATCACCATTG ATATCGCTCA CAAGCGATTC
GACACTGCTA AGTTCTACTT TACGGTCGTC GACTGCCCTG GACACCGGGA CTTCGTCAAG
AACATGATCA CCGGCGCATC CCAGGCTGAC GCAGCGATTC TTGTTGTTGC AGCACCTGAT
GGTGTCATGG AGCAGACCAA GGAGCACGTC TTCCTGGCCC GTACGCTCGG CATCACCCAG
CTGGTCATCG CTATCAACAA GATGGACGCA GTCAACTACG ACCAGAAGCG CTTTGAAGAG
GTCAAGAAGG AACTGACCCA GCTGATCGGT ATGGTCGGAT ATAAGGCAGC TGAGATCCTC
TTTATCCCGA TGTCCTCGTT CAAGGGCGTC AACATCTCAA AGAAGTCACC CGAGACCCCA
TGGTACACCG GCCCGACACT TCTTGAAGCA CTCGACACCT TCAAGGAACC GGATAAACCA
ACCGACAAGC CATTCAGACT CCCGATTCAG GACGTCTACT CGATCAGCGG TATCGGCACG
GTGCCGGTCG GCCGTATCGA GACCGGGATC ATGAAGAAGG GGATGAAAGT CTCGTTCATG
CCGGCCAACA AGGATGGAGA GATCAAGTCC ATTGAGATGC ACCACGAAGA GCAGCCACAG
GCACTCCCAG GCGACAACGT CGGGTTCAAC GTCCGTGGTG TCGGCAAGAA CGATATTCGC
CGTGGCGATG TATGTGGTCC AGCCGATATA CCACCAACCG TTGCTGACGA GTTCACCGCA
CAGATCGTTG TGCTCCAGCA CCCAAGCGCA ATCACCGTCG GATATACTCC GGTCTTCCAC
TGCCACACGG CTCAGATCGC CTGCACGTTC GTCGAACTGA GGAAGAAACT CGATCCACGC
TCAGGTCAGA CCAAGGAGGA GAATCCTACC TTCCTGAAGA GCGGCGATGC AGCCATCGTT
CAGATCAAGC CTTCGAGACC GATGGTTATC GAGAGCGTCA AGGAGATTCC ACAGCTTGGC
CGGTTTGCAA TCCGTGATAT GGGAACAACG ATCGCTGCCG GCATGTGCAT TGCAGTTCAG
CCAAAGCAGA TGATCAGATA A
|
|---|
| Protein sequence | MANDKPHMNL AVIGHIDHGK STTVGRLMFE TGAVPAHIIE NFRKEAESKG KGSFEFAWVM
DNLKEERERG ITIDIAHKRF DTAKFYFTVV DCPGHRDFVK NMITGASQAD AAILVVAAPD
GVMEQTKEHV FLARTLGITQ LVIAINKMDA VNYDQKRFEE VKKELTQLIG MVGYKAAEIL
FIPMSSFKGV NISKKSPETP WYTGPTLLEA LDTFKEPDKP TDKPFRLPIQ DVYSISGIGT
VPVGRIETGI MKKGMKVSFM PANKDGEIKS IEMHHEEQPQ ALPGDNVGFN VRGVGKNDIR
RGDVCGPADI PPTVADEFTA QIVVLQHPSA ITVGYTPVFH CHTAQIACTF VELRKKLDPR
SGQTKEENPT FLKSGDAAIV QIKPSRPMVI ESVKEIPQLG RFAIRDMGTT IAAGMCIAVQ
PKQMIR
|
|---|
| |