| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1412 |
|---|
| Symbol | |
|---|
| ID | 7270017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1455722 |
|---|
| End bp | 1457512 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643570042 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002466464 |
|---|
| Protein GI | 219852032 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.144483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAGACG ACGCGACCAC GTACCAGGAG ATGCGCGACA GGATTCTCGG CCTGCTTCAG
CAGCACGTGC CCAGGGCGGT CCCGATCCAG ACGATTGCCC GGGAACTCGA GATCGATCGG
AGAACTGCTG CCAAGTATCT CGATTTCCTC GCACTGAGCG GGGATGTCAG TATGGAGCGC
TTCGGACCGA AGAAGCTGTA CCGGCCGTCG AAGCGCCTGC CCCTGCTCGA GATCGTCAAC
CACCTGCCGG TTGCGCTCGT GATCCTGGAC GCAGACCTCC AGGTGAACAT GGTGAATGCG
AGCTTCGTCG CTACCCTCGG CCTCCACCCC GGCCACACGC TGGTCGGCGC CCCGCTCTTC
GACCTCAACC TCCCTTTTTT CTCGGACCCT GCGGTCCAGC GGAACATCGA GCGGATCCGC
CGATCGGAGA TATACCTGGA TAAGATGCAA ATGATGGACG AGCGGACGGA CAGGGTCTTC
CTCGCAGCGT TCGCGCCGAT CGTCTCCCCG ACCGCCGGCG AGGGGATCAT GGTCAGCCTC
CAGGACATCA CGGCGGTGAA AAATGCCGAG ACCGATCTCA AGGACTCGGA GAAGAAGATG
GCGACCCTCT TCGAGTCTGT TCCGAGCGGG ATCATCCTTT TTGCGGCAGA CGGGGCGATC
CTCAACGCGA ACCACGCGTC GCTGCAGGTT CTCGGTCTGC GCACCCCCGC CGATATGCGG
ATCACGAGCA TCTTCGACAT CGCCTGTTAC CGGACGAAAC TGGAGTTGCT GATCCGGGAG
GGGCGGGCTA CCGAAACCGA ACTCGCCTGC GACTTCGAGC GGTTGCGTCG GGAGCAGGGG
ATCCAGAGCA CGAAGAGCGG CATCGCCTAT TTTGATGTAG CCTTTACCCC GGTCCTTCAC
GACAGCAGGG GGGCAGCGAA GGAGTTCGCC ATCCTCTTCA AGGATATTAC GGCTAAGAGG
CGTGCGGAGA AGGAACTGAA GGAGCGGCTC GCGGGCGTCT CCAGTAACCT CCCCGGAATC
ATCTACCAGT TCTACGCCAG AGATACCGGA GAATGGGGCA TTTACTACGT TGACGCACGC
TCCGCAGATA TCTTCGGTCT CAACCCCTGG CCGGTCCGGG ACTGGTTCCA GCGGTTTTCC
GCGTGCATCG CCCCTGAGGA CCGCGACTGG TGGGACGAAT CGACCCATGA GACTGTTCAC
AGGCGCGTCC CCTGGGACTT CGAGGGCAAG TTCCTCAAGC CGTCGGGAGG CGAGATATAC
TTCCGTGGCA TTTCGCAGCC CGTCCGACTG GAGCACGAGA CGGTCTGGAA CGGAATCTTC
CTTGACATCA CCGACCGCAA GATGGCAGAG GAGGCGCTGC AGCAGAGCCA TTTTCTGGAA
ACCCGGTACC GTTCGTTCTT TGAGGACACC TGCAACGGCA TCCTGATCTA CGAGCCTGTC
GACGAAGGCA GGGACTACCT CATCACCGAC GCCAACAGGG TAACGGCGAA TCTCCTCCGC
ACGAACCGGG CCGACCTGGT TGGCAAGCGG CTCTTCGAGG AGTTTCCTGA CCTCTCGACC
CCCGAGATCC ACGCGCTCTT GCTGCGAATA CTGACTACAG AGCGGCCCGA GGCCGTCGCG
CCGCTCCGGT ACCGGGAGCG GGACGACTTC CCCCTGATCT CCCACTATGT CTTCAAGCTC
CCGTCGGGGG AACTTGCATC GTTCATGATA GATGTCTCCG AGGTGCTGGA GGGAGCGGAA
GGGCTACCAC CCGCTGTTAA GGACGCTACC AACAGATCAA ACTGCGACTG A
|
|---|
| Protein sequence | MTDDATTYQE MRDRILGLLQ QHVPRAVPIQ TIARELEIDR RTAAKYLDFL ALSGDVSMER
FGPKKLYRPS KRLPLLEIVN HLPVALVILD ADLQVNMVNA SFVATLGLHP GHTLVGAPLF
DLNLPFFSDP AVQRNIERIR RSEIYLDKMQ MMDERTDRVF LAAFAPIVSP TAGEGIMVSL
QDITAVKNAE TDLKDSEKKM ATLFESVPSG IILFAADGAI LNANHASLQV LGLRTPADMR
ITSIFDIACY RTKLELLIRE GRATETELAC DFERLRREQG IQSTKSGIAY FDVAFTPVLH
DSRGAAKEFA ILFKDITAKR RAEKELKERL AGVSSNLPGI IYQFYARDTG EWGIYYVDAR
SADIFGLNPW PVRDWFQRFS ACIAPEDRDW WDESTHETVH RRVPWDFEGK FLKPSGGEIY
FRGISQPVRL EHETVWNGIF LDITDRKMAE EALQQSHFLE TRYRSFFEDT CNGILIYEPV
DEGRDYLITD ANRVTANLLR TNRADLVGKR LFEEFPDLST PEIHALLLRI LTTERPEAVA
PLRYRERDDF PLISHYVFKL PSGELASFMI DVSEVLEGAE GLPPAVKDAT NRSNCD
|
|---|
| |