| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1317 |
|---|
| Symbol | |
|---|
| ID | 7271178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1351937 |
|---|
| End bp | 1353886 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643569951 |
|---|
| Product | protein of unknown function DUF147 |
|---|
| Protein accession | YP_002466373 |
|---|
| Protein GI | 219851941 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1624] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.521946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAACT GTTTGTATGA CCCAGGGAGA CTGAGACCTC ACTATGCACA GGTTATCATC
TGTGCAGTGC TCTGTCTTCT CCTCTCAATG GCAATCCCTT CTCTGGCATC AGCTGCTGAC
CCGCTGCTGC CCAATGAGAC AACTCCAACG GTGGTACCGG TAACGCCCAC CACAGTCCCG
ACGGTGAGCA CAACGACTAC CACCGCCACA CCGTCGCCGA CCCTGACCAC AATTCCAACG
ACAACAATAA CAACAACTAT TCCGACATCG ACCATTCCCA CCACGACCCA GATCCCGACG
GTGACGACGA CAGTCTCAAC ACCGATGACG ACGGTCTCAA CACCGACAAC CACGATCCCA
ACGCTCACCA CGATAACGAC CACACCGATC ACGACCCTGA CGACGATCTG GACTCAATCG
ACCGCCACGA CCACATCCAC CTCACATACC CCGCCGGCCC TCCTGATCAA TCCGCCGAGC
ATCGACCAGT TGAAGGTTAC TGTCGACGGG ACCTCGACGC CTGGGGAGTA TGGTCAGACG
ATCAGCAGGA TCTCATGGAA CTGGGGTGAT GGTAGGATTG AGGACCAGCC CTTCCCTGCC
TCGCACACCT ATGCACGGGC AGGTAAATAT GTGGTTGCGG TCACCAGTTA CCAGAGTGAC
GGAACCTACA ACACCCGCAC CCTTGATGTG GAGTTGACGA CCCCAACAAT CACCACGACA
GCAGTCACGA CGACCATGCC TCCGCCGGGC GCGCCCCGTC TGATCCTGAA CGCCCCCGAG
ATCAACAACA GCACGGTCAT GGTGAATGGT ATTCCGCAGG CGGGAAGCCC GTCGATGTCC
ATCCAGAAGT TAATGGTAGA TTGGGGAGAC CAGAAGAAGG ACGAATATGT GGCTTTCCCA
TTTCAGCATA CCTACGATAG TCCCGGGCAG TACCAGATCT GGATCACTGG TGTCCAGAGC
GATGGACAGT CAACCCTCCA GAACCTGACC GTTGAGATCA GTTCCCAGGT TCCCAGCACC
CTCCCAACCT CCGGTTCACC CACGGCCGTC CCCTTCTGGG CCAAGCCCGG AATCATCCCC
GGGTTGCTGG TCGTGCTGAT CGCAGCAATA GTTGGTGGTG GGGCGATGCT CTGGCGGCGG
CGCGAGCTGG GGTCCGTGGT GATCCCGACC TCAGAACCAC TCGAAGAGGC CGTGGCCGCT
TATACCCGGG CCCGTGAGCA TGGTGATCTG GTGCAGGCCC GGAAGAGCGC CCTTGAATGT
GCCCAGTTGC TGGTGATCCT TGCTGAGGCA GAACCTCAGT ACAGCTCGGC GTACCTTGAG
AAGGCGGACG ACTGGAAGGC GATCGCTCGT TCACTGACCC AGCATCTGGA GGACGAGCCA
GAACAGGCAG ACCCAGGCCC GACGCTCTCC CTCGAAAAGA ACGGAGCATG GGGGGACGCC
GAGAAGGGGG AGGATGTAAC CCTCGATGAG ATGTCGACCG AGGTTCTTGA GGGAACCGAC
ATCGATCCGG TGGTCTTTGA AGCAGTGCTG ACGATTGCCC TTGAGATCGC TCGGGAAGGC
AGAGAAGGGC AGTCTGTCGG GACCGCGTTC ATCGTTGGTG ATGCCGAACA GGTGATGAAC
GCCTCGACCC AGTTCATCCT GAACCCGTTC AAGGGACATC TGGTCGAGGA ACGGTTGATC
ACGGATCCGA ATCTGCATGA GAACATCAAG GAGTTCTCAC TCCTCGATGG TGCTTTTGTC
ATCGCGAGCA ACGGTGTGGT CGAGGCGGCA GGTCGGTACA TCACGGTTGA CACCAGTGGT
GTCTCCCTGC CGGCAGGTCT CGGTTCGCGC CATGCTTCGG CAGCAGGGAT CACCAGGGTC
ACCAACTCGG TTGGTGTTGT TGTCTCACAG AGCGGAGGAT TGATCAAGGT GATCAAGGGT
GGAAAGATCC TCTGGACGAT CACGCCATAA
|
|---|
| Protein sequence | MGNCLYDPGR LRPHYAQVII CAVLCLLLSM AIPSLASAAD PLLPNETTPT VVPVTPTTVP
TVSTTTTTAT PSPTLTTIPT TTITTTIPTS TIPTTTQIPT VTTTVSTPMT TVSTPTTTIP
TLTTITTTPI TTLTTIWTQS TATTTSTSHT PPALLINPPS IDQLKVTVDG TSTPGEYGQT
ISRISWNWGD GRIEDQPFPA SHTYARAGKY VVAVTSYQSD GTYNTRTLDV ELTTPTITTT
AVTTTMPPPG APRLILNAPE INNSTVMVNG IPQAGSPSMS IQKLMVDWGD QKKDEYVAFP
FQHTYDSPGQ YQIWITGVQS DGQSTLQNLT VEISSQVPST LPTSGSPTAV PFWAKPGIIP
GLLVVLIAAI VGGGAMLWRR RELGSVVIPT SEPLEEAVAA YTRAREHGDL VQARKSALEC
AQLLVILAEA EPQYSSAYLE KADDWKAIAR SLTQHLEDEP EQADPGPTLS LEKNGAWGDA
EKGEDVTLDE MSTEVLEGTD IDPVVFEAVL TIALEIAREG REGQSVGTAF IVGDAEQVMN
ASTQFILNPF KGHLVEERLI TDPNLHENIK EFSLLDGAFV IASNGVVEAA GRYITVDTSG
VSLPAGLGSR HASAAGITRV TNSVGVVVSQ SGGLIKVIKG GKILWTITP
|
|---|
| |