| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1299 |
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| Symbol | |
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| ID | 7271159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | + |
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| Start bp | 1330702 |
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| End bp | 1333518 |
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| Gene Length | 2817 bp |
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| Protein Length | 938 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643569933 |
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| Product | DNA topoisomerase type IA central domain protein |
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| Protein accession | YP_002466356 |
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| Protein GI | 219851924 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01057] DNA topoisomerase I, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.596273 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCATCTGA TAATCACTGA AAAGAACATT GCGGCTGACA GAATAGCCCA TATCCTCGCA
GGAAAGACCT ACGTCGAGGT GAAGAAGGAC GGGGGGGTCA GTACCTACTC GTTCAACGAC
ACGGTCGTGG TCGGTCTTCG GGGGCACGTG GTGGAGGTGG ACTTCGAGCC AGGATACACC
AACTGGCGGA GCGAGGTGAA CACTCCGAGA TCCCTGATCT CGGCCAGGAC CATCAAAGCG
CCGACCGACA AGAAGATCGT CACGCTGATC CAGAAACTGA CCAAAAAAGC CGACCATGTC
ACGATCGCGA CTGATTTTGA TACCGAGGGG GAACTGATCG GGAAGGAGAC CTATGACCTC
GTCAAGGCTG TCAAGCCGGA TGTCAGGGTC GACCGGTCCC GGTTCAGTGC GATCACCGAG
GAGGAGATCC AGACTGCGTT CGCTGCACCG GCCGAGCTTG ATTTTGCTCT GGCTGCAGCC
GGCGAGGCAC GGCAACTGAT CGATCTGATC TGGGGAGCCT CGCTCACCCG GTTCATCAGC
CTGGCCGCCC ACCGCGGCGG CAAGAACATC CTCTCTGTCG GCAGGGTTCA GAGCCCGACC
CTTGCGATGA TGGTCGACCG TGAGAAGGAG ATCGAGGCGT TCGTGCCTGA ACCCTACTGG
GTGCTCACCG TCGATTCAAA CAAGGACGGG GAGCCGGTGC TCGCCCGTCA TACCACAGCA
CGGTTCACTG ATGTGGCGAT AGCAGAGGAG GCGAAAGAAG CCACCCGCGC CCCACTGATG
GTGACCGAGG TGAAGGAGGG ATCCAAGGTC GACCGTGCTC CGACTCCGTT CGATACCACA
GGTTTCATCG TGGCCGCCGG CCGGCTCGGT TTCTCTGCCG CGAACGCGAT GCGGATCGCA
GAGGATCTGT ACATGCACGG GTACATTTCG TATCCCCGTA CAGACAACAC CATCTATCCC
AGGTCGCTCG ATCTGAATGG CGTCCTCAAG ACGCTGCAGA AGACCGAACT CTCGTCTGCT
GTCATATGGG TTATGGCCAA TCGGAGACCA GTGCCGACCC AGGGTAAGAA GTCCACCACC
GACCACCCGC CAATCCACCC AAGTGGAGCG GCGACCAGGG CCGAACTCGG CGACGAGCGG
TGGAAGATCT ATGAACTGGT AGTCCGCCGG TTCCTCGCGA CTCTCTCCCC TGATGCCCGC
TGGATGACGA TGAAGGTCCT CTTTACGGCT GGAAATGAGC CGTACACCAC CACCGGAGCG
ACTCTGCTCG AGGCTGGATG GCGGACTGTC TACCCCTACA GCGATGCGAC CGAACACCCG
CTCCCGCGCT TTGCGGTCGG CGATAGCCTG CCGATCGAGC AGGTGAACCT CGACCGGAAG
GAGACCCAGC CGCCGCCCCG GTACACCCAG AGCAGGCTGA TCCAGCAGAT GGAAGAACTC
GGGCTCGGAA CCAAGAGTAC CCGGCACGAG GTGATCGGGA AACTGGTCGG CCGGAAATAT
ATCGAAGGGA ATCCGCTCAG GCCGACGCTG GTCGGACGGG CCGTGATCGA GTCGCTCGAA
GACCATGCGG CTGCCATCAC CCGACCGGAC ATGACCCAGA CGATCGATGC ACATATGCAG
CAGATCAAAG AGCGGAAGCG GACACGCGAT GATGTGGTGA CCGAATCGCG GGCCATGCTG
AACCGTGCGT TCGACGAACT GGAGGAGCAC CAGAGTCAGA TCGGTGAGGA TATCATGGGG
AGGACCGTCG AGGAGATGAT CCTCGGCCCC TGTCCTGTCT GTGGGAGCGA TCTCCGGATC
CATCATATCC GGAACAGCAG CCAGTTCATC GGATGCACCC GGTATCCGGA CTGCCGGTTC
AACATCGGAC TGCCCCTGAC CCAGTGGGGA TGGGCGATCA GGACCGATAC GGTCTGCCCA
ACCCATCACC TGAACCATGT CAGGTTGATC GCCAAAGGGT CCAGGCCCTG GGATATCGGC
TGCCCGCTCT GTCACCATAT CGAATCCAAT CAGGAGACGA TGGTGCTGAT CCCCTCGATG
ACCGAGGAGA TACTCGGACG GTTGCAGCAG CATCACATCT ATACCGTTCA TGAAGTCGCC
GATGCACCCC CTGAGGCGCT CGCCTCCGCG GCAGAGATTT CATCAACAGC GGCGGAACAC
CTGAAGTCTG AAGGAGAAGC GGTCCTTGGA CTCCTCCGGC TCCGCTCAGA ACTGCGAAAA
TTTGTCAGAA AGCAGGTTCC ACCCCGGCGC GGCAGGAGTC ATGCCAAGAT CATGAAGCAT
CTCCATGCGA ACGGTATCAA TACGATCGCC GACCTCGCAA AGGCGGACCC GACCCTGCTT
CGGACAGCAG GGGTCGGGGA GAAGGAGGTG ACATCCCTCC TTATGCAGGC GAAGGAGTAC
TGCAACGACA AGACGTTGCG TGCCATCGGA GTGCCGGCGA TCAGCCTCAA AAAGTACTAT
GCCGCAGGAA TCCAGAGTCC CGAGGATTTC TGCAGGTATC ATCCGGTCTA TCTGAGTGTC
AAGACCGGAA TCAGTCCGGA CACCACGTTC CGGCATGCAG AGATGGTCTG CATCGCCCAG
AACAGACCGG TGCCCCGCAA AGTGACCAGG GCAATGCTCG AACGGGGGCG TGCCGAACTA
TTGACGATTC CCGGGCTTGG GGAGACGACG ATCGAGAAGC TGTACAGCGG CGGCGTGATC
GACGGCATGA CCCTTGCCTC TGCAGATCCT GCGGCGCTGG CCAGCCATTC CGGGATCCCG
CTCAAGAAGG TACAGGAATT TCAATCGCGG CTCCCTGGTT CCTCTCAGGC CAGTTGA
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| Protein sequence | MHLIITEKNI AADRIAHILA GKTYVEVKKD GGVSTYSFND TVVVGLRGHV VEVDFEPGYT
NWRSEVNTPR SLISARTIKA PTDKKIVTLI QKLTKKADHV TIATDFDTEG ELIGKETYDL
VKAVKPDVRV DRSRFSAITE EEIQTAFAAP AELDFALAAA GEARQLIDLI WGASLTRFIS
LAAHRGGKNI LSVGRVQSPT LAMMVDREKE IEAFVPEPYW VLTVDSNKDG EPVLARHTTA
RFTDVAIAEE AKEATRAPLM VTEVKEGSKV DRAPTPFDTT GFIVAAGRLG FSAANAMRIA
EDLYMHGYIS YPRTDNTIYP RSLDLNGVLK TLQKTELSSA VIWVMANRRP VPTQGKKSTT
DHPPIHPSGA ATRAELGDER WKIYELVVRR FLATLSPDAR WMTMKVLFTA GNEPYTTTGA
TLLEAGWRTV YPYSDATEHP LPRFAVGDSL PIEQVNLDRK ETQPPPRYTQ SRLIQQMEEL
GLGTKSTRHE VIGKLVGRKY IEGNPLRPTL VGRAVIESLE DHAAAITRPD MTQTIDAHMQ
QIKERKRTRD DVVTESRAML NRAFDELEEH QSQIGEDIMG RTVEEMILGP CPVCGSDLRI
HHIRNSSQFI GCTRYPDCRF NIGLPLTQWG WAIRTDTVCP THHLNHVRLI AKGSRPWDIG
CPLCHHIESN QETMVLIPSM TEEILGRLQQ HHIYTVHEVA DAPPEALASA AEISSTAAEH
LKSEGEAVLG LLRLRSELRK FVRKQVPPRR GRSHAKIMKH LHANGINTIA DLAKADPTLL
RTAGVGEKEV TSLLMQAKEY CNDKTLRAIG VPAISLKKYY AAGIQSPEDF CRYHPVYLSV
KTGISPDTTF RHAEMVCIAQ NRPVPRKVTR AMLERGRAEL LTIPGLGETT IEKLYSGGVI
DGMTLASADP AALASHSGIP LKKVQEFQSR LPGSSQAS
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