| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1201 |
|---|
| Symbol | |
|---|
| ID | 7271479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1234488 |
|---|
| End bp | 1235786 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643569838 |
|---|
| Product | S-layer-like domain-containing protein |
|---|
| Protein accession | YP_002466262 |
|---|
| Protein GI | 219851830 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1361] S-layer domain |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGTTTC GTAAGTTTTT CATTATTCCA CTCCTAATCG TACTCATCGC CTGCGTGCTG
GTCTCTCCAG CCATGGCCGG TACCAAGTAT CTCTCCGGCG GCCCGTCGCT CTCAGCGGCG
GTCACCGGCA CCAACGAACT GATCTCCGGC CAGACCGTGC CATTGCAGGT GACGGTCCAG
AACAGTGGTC TGATCGACTC CAAGTTCTCC CAGACCGGAC TGGTCGACCG GACCGATCTA
CCGAACACCG CCAAGACGGT GACAGTCGGG CTTGGTTCCG GTAGCGCACC GGTCACGATC
CAGTCGGATC CGCAGATGAT CGGGGATATC CTCGGAGGTG CTTCCGGGCA GTCCAAGTTC
AATGTTAAGG TCGAAGCCGA TGCTCCATCA GGCACCTACA CCCTGCCGGT CTCAGTGAAT
TACACCTATC TCGAGTCTGC AGAACAGGTC GGGACCGATT CGCTGAACTA TAACTATGTG
ACCAAGAGCC TGATCATCCC CCTGACCGTC ACGATCAGGT CCGAAGTGAT CGTCGACGTC
CAGAAGATCT CGGCAGAGCA GTTGAACGTC GGCACTGAGG GATATCTGAA CCTGACCCTG
CAGAACACCG GGAACGAGAA TGGTAAGAAT GCCATCGTGA AGATCGTCAG AAACGGTGCC
AGCCCGATCA CCCCGACCGA CTCCTCGGTC TACATCGGTG ACTTTGCAAA GGGCGCCGTC
GTGAACTGCA GGTACCGGGT CGCGGTCTCC ACCGAGGCAG CCGCCCAGAC CTACCCGGTC
GACGTCATCG TCGCCTATGA GGACCATGAC GGGATTAACA GGACCTCCCG GCTCCAGACG
ATCGGCGTCC CGATCGGCGG CAAGATAGAC TTCAAGGTCA GCTCTGAGGC ACCATCGATC
AACCCCGGCC AGAAGAAGGT GCTCGATGTC CAGTACACCA ACGTCGGTGC GACCACCGTC
TACAGCGCCC AGGCCCGACT CTCAGCGGTG GACCCGTTCA CCTCCAACGA TGACACGGCC
TACCTTGGGG ATATAAAGCC CGGCGACTCG GTGATGGCAC ACTTCGAGGT ATCGACCACA
TCAGACGCGA CCATCAAGCA GTACGGCCTC GACTCTGAGA TACGGTACCG CGATGCACTC
GACAACTCCC AGATCTCGGA TACCATGAAG GTCCCGGTGA ACGTCGTGGC CAAGACAGGG
ACCAGTGCAA TCCTCGGCAA CCCGATTATC CTTGCCGTGA TCGCGGCCAT CATAATCGGT
GTCGGCTACT TCCTCTACAC CAGGAAGAAA CAGAACTAA
|
|---|
| Protein sequence | MKFRKFFIIP LLIVLIACVL VSPAMAGTKY LSGGPSLSAA VTGTNELISG QTVPLQVTVQ
NSGLIDSKFS QTGLVDRTDL PNTAKTVTVG LGSGSAPVTI QSDPQMIGDI LGGASGQSKF
NVKVEADAPS GTYTLPVSVN YTYLESAEQV GTDSLNYNYV TKSLIIPLTV TIRSEVIVDV
QKISAEQLNV GTEGYLNLTL QNTGNENGKN AIVKIVRNGA SPITPTDSSV YIGDFAKGAV
VNCRYRVAVS TEAAAQTYPV DVIVAYEDHD GINRTSRLQT IGVPIGGKID FKVSSEAPSI
NPGQKKVLDV QYTNVGATTV YSAQARLSAV DPFTSNDDTA YLGDIKPGDS VMAHFEVSTT
SDATIKQYGL DSEIRYRDAL DNSQISDTMK VPVNVVAKTG TSAILGNPII LAVIAAIIIG
VGYFLYTRKK QN
|
|---|
| |