| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0943 |
|---|
| Symbol | |
|---|
| ID | 7272436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 978938 |
|---|
| End bp | 979528 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643569582 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_002466018 |
|---|
| Protein GI | 219851586 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.104926 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.485023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGAC ATGGTGGGAT CAAAAAAGAT GAAGAAGAGC AGGTTCTGAC CCCTGCAGCG
TGCGAAGAGA AGGGGGAGTC GTTCCTCGAC GAGGATGACT ATATCGAAGC GCTCTTCTGG
TATGACCGTG CAGCAGAACT GGCTCCCCTC TCTGCAAAGG GGCTGTTCGG CCGGGGATAT
GCGCTTCGGA AACTGGGGAG GCTGGTGGAG GCACTCGCCA GTTTTGATCA GGCCCTCCAG
CTCGACCCTG AGTCGATCCC GGTGGAGGCC AATAGGGGAT ATGTTCTTCG GGAGCTCGGC
CGGCTTTCCG AGGCGGTGGC CGCCTTTGAT GCAGCCATCC TTGAGAACCC GGGACATATC
AAGGCGATGA CCGGTCGGGG AATGGCCCTG GTGGACCTGG GCCGGCTTGA AGAGGCACGG
GATCAGTACC TTCAGGCGCT CAATCTGAAC ATGATGAACG CGTTCGTCTG GCATCAGTTG
GGGATCGTCC GGCAGCTCCT CGGGGAGGAA GAGGCTGCCA GTGAGTGCTT CCAGAAGGCT
GACTCTCTTG GGTATTATCG GGAGGGGGCT GGAAACCAGA TTCCGATTTA A
|
|---|
| Protein sequence | MDGHGGIKKD EEEQVLTPAA CEEKGESFLD EDDYIEALFW YDRAAELAPL SAKGLFGRGY
ALRKLGRLVE ALASFDQALQ LDPESIPVEA NRGYVLRELG RLSEAVAAFD AAILENPGHI
KAMTGRGMAL VDLGRLEEAR DQYLQALNLN MMNAFVWHQL GIVRQLLGEE EAASECFQKA
DSLGYYREGA GNQIPI
|
|---|
| |