| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0874 |
|---|
| Symbol | |
|---|
| ID | 7272364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 898912 |
|---|
| End bp | 900351 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643569519 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_002465955 |
|---|
| Protein GI | 219851523 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0132531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA AATCCACAGA TTTCGTAAGC CCTCAGAGGG AAAAACTCGA CCCGAAGATA
CTCAGGGTAT CCGTCATTAT GGTGATCGGT GCTCTGGCGC CGTTATTGGA TTCGACCATG
GTCAATGTGG CCATAAATAT CATTGCCGGC GACCTGAATA GCACGATTTC GATCATCCAG
TGGGTTATCA CGGGATATAT TCTGGCGATG GCTTTAGCAG TTCCAGTTTC AGGATGGGCT
GTCAATCGTT TCGGCGGAAA GCGGGTGTAT ATGTTTTCAC TCTTCGTATT TTTCGCAGGC
TCGGTCCTTT CATCCCTCTC ATGGAATATT GACAGCCTGA TCGGTTTCAG ACTCCTCCAG
GGGGTTGGTG CCGGTTTAAT GATACCAACG TTGCAAACAG TGCTTGTTCA TATAGCCGGT
AGCAGAAATT TGGGACGTGT GATGTCGATT GTCAGCATTC CTGCATTGTT GGGGCCGATT
CTTGGCCCGG TGCTGGGAGG GGTTATTGTA AACAGTTTAA ATTGGCGCTG GATCTTCTAT
GTCAATATTC CAATCACCAT CATCGCTCTC CTGTTGACCT GGCGGGGTGT ACCGACTGAT
GAACCTTCCA CCAGTAAACA GTCCCTCGAC ATCATCGGCA TTCTGCTGGT CTCTCCCGGG
TTTGCTCTCC TCATCTACGG CATCTCCCAG ATCAGTTCTC ATGGCGGCTT CACGAGCAGT
GCGGTGCTTA TTCCGCTGGT GATCGGCCTG CTCCTGATGG TCGCGTTTAT TGTCTATGCC
CTGCGTACGA AAAATGCGCC GGTGATTGAT GTGCGTCTGT TCAAATCGCG TAATTTTTCC
GCTTCGACTG CTTTACTTTT CCTGTCCGGC ATCATCACGA ATGGCGCCAT GCTTCTTCTC
CCTTTATACT ACCAGCAGGT GCGTGGCGAA AGCGTCCTGT TTGCCGGCCT GTTGTTGATT
CCACAGGGGG TTGGGATGTT ATTGACCAGA AACTGGGTCG GGAGACTGGC CGACCGCATC
GGTTCGCGCA GCATCGTCGC GATAAGCCTC GTGGTGACCA TGATCGGGAC GGTACCATTT
GCATGTGCTG GTCCAGAGAC AAATCAAATT CTTCTGGCAG TGGCATTGCT GATTCGAGGA
GCGGGTCTGG GTGGATTGCT CATTCCGATC ATGGCTTCTG CATATCAGGG ATTGAGCAGA
GATCAGGTCC CTCATGCCAG TAGTGCAACG AGGATATTTC TGACCATCGG GGGAGCATTC
GGGTCGGCTG TTCTTGCAAT ACTCATCGAG CATCAACCTT CCGGTCTTTC GGTCCTCGAT
ATCCACACCG TTGTAAGTGC ATACAATGGT GCCTTCTGGT GGTTGATTGG CTTTACCGTA
ATTGCAATAA TTCCTGCACT CTTACTACCA CTGCGTAAAT TTGAATCCGT GATACAATAG
|
|---|
| Protein sequence | MIKKSTDFVS PQREKLDPKI LRVSVIMVIG ALAPLLDSTM VNVAINIIAG DLNSTISIIQ
WVITGYILAM ALAVPVSGWA VNRFGGKRVY MFSLFVFFAG SVLSSLSWNI DSLIGFRLLQ
GVGAGLMIPT LQTVLVHIAG SRNLGRVMSI VSIPALLGPI LGPVLGGVIV NSLNWRWIFY
VNIPITIIAL LLTWRGVPTD EPSTSKQSLD IIGILLVSPG FALLIYGISQ ISSHGGFTSS
AVLIPLVIGL LLMVAFIVYA LRTKNAPVID VRLFKSRNFS ASTALLFLSG IITNGAMLLL
PLYYQQVRGE SVLFAGLLLI PQGVGMLLTR NWVGRLADRI GSRSIVAISL VVTMIGTVPF
ACAGPETNQI LLAVALLIRG AGLGGLLIPI MASAYQGLSR DQVPHASSAT RIFLTIGGAF
GSAVLAILIE HQPSGLSVLD IHTVVSAYNG AFWWLIGFTV IAIIPALLLP LRKFESVIQ
|
|---|
| |