| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0859 |
|---|
| Symbol | |
|---|
| ID | 7272349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 886172 |
|---|
| End bp | 887638 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643569506 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_002465942 |
|---|
| Protein GI | 219851510 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATATC ATCCGAAGAA CATGCCTCTG ATGACGGCAT GTCTGTTAAT CACTGTTCTT
CTGCTGCTAG TCGGCACGGT CAGCGCTGCT GGTGCCCCGA CAGCAGCATT CAGCAGCACG
CCGATCAACG GCACTGTACC CCTGACCGTC AACTTCACCG ATACATCGAC CGGCAGTCCA
ACCGGCTGGT CATGGTTCTT CGGTGATGAG ACGTATACCC AACCGTGGAC GCAGCAGAAT
GCACATTCCG GGTGGTCGGA AAGATTCAGT CACAGCAGCG TGGTAATGCC GGATGGGAGC
ATCGTACTCA TGGGAGGCTA TAGTAATGAA TCAAGAGCCA TTTTGAATGA TACATGGAGG
TCGATCGATA ACGGCGCTAC GTGGACGCTG ATGAACGCGA GTTCCGGGTG GCCGGCAAGG
GCCGGACTGA GCAGCGTAGC GATGCCGGAC GGAAGCATCG TACTCATGGG CGGTGGTAAT
GAATCCACCT ATATGAACGA CACATGGAGG TCGACCGATG ACGGCGCTAC ATGGACGCTG
ATGAACGCGA ACTCCGGGTG GTCAGGAAGA TTCTATCACA GCAGTGTAGC GATGCCGGAC
GGAAGCATCG TACTCGCGGG CGGTAGGGAT GAGAGCGGGA ATCTCACAAA TGATACGTGG
AGGTCGACTG ATGACGGCAA AACCTGGACG CTGATGAACC CGAACTCCGG ATGGTCTGAG
CGGGACTGCC AGACAGCGGT CGCGATGCCG GACGGAAGCA TCGTACTCAT GGGCGGTTGG
GACGACACCA CCCCCCTGAA CGACGTATGG CGGTCGACTG ATAACGGCAG AACGTGGACG
CTCGTGAACG CGAGTTCCGG GTGGTCGGCA CGGTACAGTC ACAGCAGCGT AGTGATGCCG
GACGGGAGCA TCGTACTCAT GGGAGGTTTG AACGACACCG CCCTGTTGAA CGATCTGTGG
CGGTCGACCG ACAAGGGCGA AACATGGGCG CAGGTACAAA ATGCCGGTTG GTCGGGAAGA
TTCCATCACA CCAGCGTAGC GATGCCGGAC GGAAGTATCG TACTCATGGG CGGTTTGGAC
GACTCCACCA TCCGGAACGA CACGTGGCGG CTCCAACCCG CTGGATCGTC ACAACAGAGT
CCGTCGCACA CCTATACCAC CGTGGGAATC TACTCGGCAA CATTGCAGGC GTTCAATGCC
GCAGGATTCA GCAGTACACA AAAGGTCTCG GCCATCGTCT CTCCGATGCA ACCGGTACCC
CCGTCGGTAA CCGCCCCCCG GGACCTCAAC AACGACGGGC TCTATGAGGA TATCGACGGC
AATGGGGTTC TGAATTTCAA CGACGTAGTC CTCTTCTTCA ACCAGATGGA CTGGATAGCC
GACAATGAAC CGGTCAGAGC CTTTGACTTC AACAGGAACG GCCGGATCGA TTTCGATGAT
GTCGTGATAG TGTTCAACGC ACTGTAA
|
|---|
| Protein sequence | MIYHPKNMPL MTACLLITVL LLLVGTVSAA GAPTAAFSST PINGTVPLTV NFTDTSTGSP
TGWSWFFGDE TYTQPWTQQN AHSGWSERFS HSSVVMPDGS IVLMGGYSNE SRAILNDTWR
SIDNGATWTL MNASSGWPAR AGLSSVAMPD GSIVLMGGGN ESTYMNDTWR STDDGATWTL
MNANSGWSGR FYHSSVAMPD GSIVLAGGRD ESGNLTNDTW RSTDDGKTWT LMNPNSGWSE
RDCQTAVAMP DGSIVLMGGW DDTTPLNDVW RSTDNGRTWT LVNASSGWSA RYSHSSVVMP
DGSIVLMGGL NDTALLNDLW RSTDKGETWA QVQNAGWSGR FHHTSVAMPD GSIVLMGGLD
DSTIRNDTWR LQPAGSSQQS PSHTYTTVGI YSATLQAFNA AGFSSTQKVS AIVSPMQPVP
PSVTAPRDLN NDGLYEDIDG NGVLNFNDVV LFFNQMDWIA DNEPVRAFDF NRNGRIDFDD
VVIVFNAL
|
|---|
| |