| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0187 |
|---|
| Symbol | |
|---|
| ID | 7270958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 217174 |
|---|
| End bp | 218301 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643568842 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_002465299 |
|---|
| Protein GI | 219850867 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.444073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0060325 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGAG TCGCATCAAT AGGCGGGGAT GGGATCGGTC CCGAGATCCT CGTCGAAGGA
AGGAAAGTGC TGGATGCCGC TGGAGAGCGG TTCGGATTTG ATATCCAGTG GGATGAATAC
GACCTTGGGG CAGAGCGGTA TCTGGCCGAC GGCACGCTGC TGACCGAGGA TGATCTCAAG
GAGATCGGTA AACATAAGGC CATCTACTTT GGTTCGATCG GGGACCCGCG GGTCCAGCCC
GGGGTGCTCG AGAAGGGGAT CCTCCTCGCA CTCAGGTTCT ACTTCGACCA GTATGTGAAC
CTCCGCCCGA TCAAGCTCCT TCCCGGGGTC TCGACCCCGC TGGCAGGGAA GGGACCGGAG
GATATCGACT TTGTCGTGGT CAGGGAGAAC ACCGAGGACT TCTATGTCGG TCTCGGCGGC
CGGGTGAAGG GGCCGGGGAT CTCCAGACAG GAACTGGTTC TGGCCAGGGA ACTCTATAAT
GTGAAGTTCG GGCTGGATAT CGAGTCGGAT GCCGATGAGA TTGCCTACCA GGTTGGGGTC
GTCTCCAAAC AGGGATCCCG CCGGGTGATC TCGTACGCCT TTGATATGGC TGAGCGGCGG
AACAAGAAGC TCGCGTCGGT GGACAAGGCG AATGTCCTCT CTGATGTCTA TGGACTCTGG
AGAGAGGTCT TCACCTCGGT CGGTGCTGAT CATCCCTCGG TCGCGACCGA GTTCATGTTC
GTCGACGCGG TTACGATGTG GTTCGTCAAG AACCCAGAAT GGTTCGATGT GGTCGTGACC
CCGAACATGT TCGGGGATAT CATCACCGAC CTCGGGGCGA TGATCCAGGG CGGCCTCGGC
CTCGCCCCTG GCGGGAATAT CAATCCGGTG GGGACCTCGA TGTTCGAGCC GATCCATGGG
TCTGCACCTA AATATAAGGG TCAGAACCGT GCGAACCCGA TCGCCACCAT CTGGGCCGGT
TCGCTCCTCC TCGATCACCT CGGGGAGCAG GAGGCCGCTG CAGCCGTGGT CAGTGCCATC
GCCACCTCGA TCACCGATGG TGTGGTGACG AAGGATATGA GCGGCTCGAC AGGTACCAGC
GGTGTCGGCG ATCATATCGC CGCCCTGGTC CGGGATGGGA ACCAGTGA
|
|---|
| Protein sequence | MYRVASIGGD GIGPEILVEG RKVLDAAGER FGFDIQWDEY DLGAERYLAD GTLLTEDDLK
EIGKHKAIYF GSIGDPRVQP GVLEKGILLA LRFYFDQYVN LRPIKLLPGV STPLAGKGPE
DIDFVVVREN TEDFYVGLGG RVKGPGISRQ ELVLARELYN VKFGLDIESD ADEIAYQVGV
VSKQGSRRVI SYAFDMAERR NKKLASVDKA NVLSDVYGLW REVFTSVGAD HPSVATEFMF
VDAVTMWFVK NPEWFDVVVT PNMFGDIITD LGAMIQGGLG LAPGGNINPV GTSMFEPIHG
SAPKYKGQNR ANPIATIWAG SLLLDHLGEQ EAAAAVVSAI ATSITDGVVT KDMSGSTGTS
GVGDHIAALV RDGNQ
|
|---|
| |