| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_3775 |
|---|
| Symbol | |
|---|
| ID | 7267849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | - |
|---|
| Start bp | 4604729 |
|---|
| End bp | 4606348 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643568583 |
|---|
| Product | RNA binding S1 domain protein |
|---|
| Protein accession | YP_002465047 |
|---|
| Protein GI | 219850614 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.704215 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATC TCGATGATTA CGAAGGCGAT CCGGCCCTCA ACCGTGAGCG CCTGAGTGAA
CTGTTAACCG ATCAACTCGA AGAGCTGGCC CGCGCGATTC ATTCGCGCGA TCAACTGGTG
CGAGCACGCG CGGCCAGCCG ACTGGTCAAT CTTGAGGTCG ATCCTGATCT GGTGTTACCG
ACCCTGCACC ATCATTGGCC GGCCGTGCGT GAGGTTGCCA TCGAAGCCAT TGGGTATACC
GGTAAACCGC TGAGTCCTGC GGTCATCGAT GCCTTATTAG CAAGTATCGA TGACCCGAAA
CCGTTTGTAG CCGCCGCGGC AATCCGCACG TTAGGGCGAA AACAGATCGC AGAGGCACGT
GAACAAATCA CAGCTTGTCT CGATGATCCA GATCCTCCCA TCGTTGCTGC CGCCATCGCC
GCACTTGCCC GCCTTGGTGA TACCACGCTC GCTGTAGCCA TTCCCAACTT TCTCAACAGC
CCACACCTTG CCATCCGTAT CGCGGCTGCC GAGGCGGCGG GAATACTGCA TACTCCGGCA
GCCGTCCCCG GGCTGTTACG CTTGCTCGAA GATTGCATAA CGGCGTGGCA GGAAACTCAG
CCCCATATTC CCAGCCGAGC GGCAAGTGTC GCAATGCAGG CATTAGCGCG CTTACGTGCC
CGCACGGCGA TACCACTCCT CGTTGAAATC GCCCGCTATG TCGTCGGTCT ACGAACATTA
GCAGTGCGTA CTCTCAACCA ACTACAAGCC GTAGAAGCAG CTCCGGCGAT CGCATCACTC
CTTCACGAAG AAGGCGGTCA TCTCTTACAC GAAGTCATTC GTTTGGTGAA GATGGCCGAT
TACCGGGCTG CACTACCTGA ATTACGCGCT CTTCTCCAAC GCTCTGCCCC TAACCGACGA
TCATTGATGA TCAAGATTAT GCAGATTCTG GTCGAATGGA ATGACCGGGC GAGTATGCCA
TTACTTGCCC AACTGGCCGA GAGCTTTCCC AACGCCGAGA TTCGTCATCA TGCGGCCCGC
TGCCTCACCA TCCTAGAGCA AGCGACCACT ACACCCGAAG AACCATCGCC ACCGTTACCA
GATCCTGCAC CAACAGTATT ATGTAGTGAA CGTCTCCGCA AACGGCAAGA GCGGATCGCC
TCCGTCAGCG TTGGGAGCAT CGTTGAGGGA ACGGTGTTGC GCGTATTGAG TTATGGAGCA
GTGATCGATC TCGGTGGGAT AGAAGGGTTT GTTCACGTGC GCGACATCGA CTGGCATTGG
ATCAGCGACG CACGCAACGC GCTGCAACTC GGCCAACCGG TCCGTGCGAT GATTACCAAC
ATTGACCGGC AGCATCTGCG TATCAATCTG AGCATCCGCG AACTTACCCC TGATCCGTGG
GTAAGTCTCT CGCAACACCT TGCCGGCGGC ATGACGGTGC AAGGAACTGT TACCGGTATC
ACCGGTTTTG GTCTGTTTGT CGAACTCTTA CCCGGCATCC AAGGCCTCGC CCATATCAGC
AAAATTCCGG CGAAGCGCCG ACCATTACGT GAATGGTTCC CACTCGGTAG TCAGGTGATG
GTCACGATCC TCGCGATCGA TAACGAGCAC CGACGCATTG CGCTGAGTGT TAATGAATGA
|
|---|
| Protein sequence | MNDLDDYEGD PALNRERLSE LLTDQLEELA RAIHSRDQLV RARAASRLVN LEVDPDLVLP
TLHHHWPAVR EVAIEAIGYT GKPLSPAVID ALLASIDDPK PFVAAAAIRT LGRKQIAEAR
EQITACLDDP DPPIVAAAIA ALARLGDTTL AVAIPNFLNS PHLAIRIAAA EAAGILHTPA
AVPGLLRLLE DCITAWQETQ PHIPSRAASV AMQALARLRA RTAIPLLVEI ARYVVGLRTL
AVRTLNQLQA VEAAPAIASL LHEEGGHLLH EVIRLVKMAD YRAALPELRA LLQRSAPNRR
SLMIKIMQIL VEWNDRASMP LLAQLAESFP NAEIRHHAAR CLTILEQATT TPEEPSPPLP
DPAPTVLCSE RLRKRQERIA SVSVGSIVEG TVLRVLSYGA VIDLGGIEGF VHVRDIDWHW
ISDARNALQL GQPVRAMITN IDRQHLRINL SIRELTPDPW VSLSQHLAGG MTVQGTVTGI
TGFGLFVELL PGIQGLAHIS KIPAKRRPLR EWFPLGSQVM VTILAIDNEH RRIALSVNE
|
|---|
| |