Gene Cagg_1715 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_1715 
Symbol 
ID7269421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp2096687 
End bp2098108 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content68% 
IMG OID643566557 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_002463052 
Protein GI219848619 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCCAA CGGGCCGCCG CGGGCGCCGG GAACCCACCG CCGCCATTGG GCCGCACGGC 
CGCCGGGAAC CCACCGCCGC CATTGGGCCG CACGGCCGCC GGGAACCCAC CGCCGCCATT
GGGCCGCACG GCCGCCGGGA ACCCACCGCC GCCATTGGGC CGCACGGCCG CCGGGAACCC
ACCGCTGCCA TTGGGCCGCA CGGCCGCCGG GAACCCACCG CTGCCATTGG GCCGCACGGC
CGCCGGGAAC CCACCGCCGC CATTGGGCCG CACGGCCGCC GGGAACCCAC CGCCGCCATT
GGGCCGCACG GCCGCCGGGA ACCCACCGCC GCCATTGGGC CGCACGGCCG CCGGGAACCC
ACCGCCGCCA TTGGGCCGCA CGGCCGCCGG GAACCCACCG CCGCCATTGG GCCGCACGGC
CGCCGGGAAC CCACCGCCGC CATTGGGCCG CACGGCCGCC GGGAACCCAC CGCTGCCATT
GGGCCGCACG GCCGCCGGGA ACCCACCGCC GCCATTGGGC CGCACGGCCG TGCGGCCCTA
CAGAGGGGAT TCGGTATGGG AAATACCTTT TTAATTACCG GTGGTACCGG TTATCTGGGC
AACACGTTGA TTCGCCATGC CCGCGCGCGT GGCCTACCGA TTGTGGCGAC TTTTCATCGC
CAAACGCCAC CGCCAAGCAC TGACATCACG TGGTATCCTC TCGATCTACG CGACCCGACT
GCTGTCCGGC GGTTGATTAC CGAGGTGCAA CCGGCAGTCA TTATTCATAC TGCCTTTCGC
CAATACGAAC CCGACCTGAT GGCGATTACC GGCGAAGGCG CCGGACATGT GGCAGCAGCC
GCGGCAGAGA TTGGAGCACG CCTTATTCAT ATGTCAAGTG ACGTCATTTT TGACGGTGAG
AAGGCAGGCG CCTACACCGA GGCCGATCCG CCCAACCCGA TTACCGACTA TGGCCGGGCC
AAAGCGCGTG CGGAGGAGTT GGTGCAACAC CATCATCCGC ACGCCGCGAT TGTGCGTACC
TCGCTCATCT ACGGCTTTGA TCCGCTCGAC CGCCACAGCG CCTTTGCACT GGCTGTAGCG
CGTGGCGAAC GGACGGAGAA ACTCTTCTAC GACGAGCTAC GCTGTCCCGT GTTCGTTGAT
GATCTGGCAG CGGCGCTGCT CGATCTGGCG CAGAGTGATT ATCGCGGGGT GATCAATCTG
GCCGGTGCCG AGACACTCAG CCGCTACGAG TGGGGCCGTT TACTGGCTCA GGCCCACGGG
CTTGACCCCG ACCGTATCGT CGGCGCACTC AGCGCCGAAA GCCCCACCCC GCGCCCGCGC
AACTGCGCGC TTGACATCAG CCGTGCGCTT GGGTTGGGCT ACCGGCTGCG CGGTGCGCGC
GAGGTGTTGC GCACTATGGG CCGGTTGCCG GCGCTTGATT AA
 
Protein sequence
MLPTGRRGRR EPTAAIGPHG RREPTAAIGP HGRREPTAAI GPHGRREPTA AIGPHGRREP 
TAAIGPHGRR EPTAAIGPHG RREPTAAIGP HGRREPTAAI GPHGRREPTA AIGPHGRREP
TAAIGPHGRR EPTAAIGPHG RREPTAAIGP HGRREPTAAI GPHGRREPTA AIGPHGRAAL
QRGFGMGNTF LITGGTGYLG NTLIRHARAR GLPIVATFHR QTPPPSTDIT WYPLDLRDPT
AVRRLITEVQ PAVIIHTAFR QYEPDLMAIT GEGAGHVAAA AAEIGARLIH MSSDVIFDGE
KAGAYTEADP PNPITDYGRA KARAEELVQH HHPHAAIVRT SLIYGFDPLD RHSAFALAVA
RGERTEKLFY DELRCPVFVD DLAAALLDLA QSDYRGVINL AGAETLSRYE WGRLLAQAHG
LDPDRIVGAL SAESPTPRPR NCALDISRAL GLGYRLRGAR EVLRTMGRLP ALD