Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dhaf_4719 |
Symbol | |
ID | 7261748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfitobacterium hafniense DCB-2 |
Kingdom | Bacteria |
Replicon accession | NC_011830 |
Strand | - |
Start bp | 5037049 |
End bp | 5038452 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643564630 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_002461150 |
Protein GI | 219670715 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00408234 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGCATAG GATATGGCTT GAACCTGGAG CAGACACAGA AGTTGATCAT GACGCCGGAG TTGCGTCAAG CGATTGCCGT TTTACAGTTA TCCGCTTTAG AACTCTCCGG TTATGTGGAG CAGCAGATGC TGGAAAACCC TCTTCTCGAT GTGATTGACG ATTCCGCCGA CAAAAGCGCG GATCATACCC AGGAAGATTC CCCGGCTCAA GAGAAGAACG AGGGGGCGGA GGAAGGGCCC TGGGATATGA ACTGGGAAGA GTATTTTCAA CATCAGGAAG AACGCATCAG CAAGGAGTAT GACCCGGACG CCGGGCAAAG CACCCGCTTT GAGCCTTTTT TAGCGGCAGG TCCTTCCCTT CAGGAGCATT TGCTGGAACA GATTCATATT CAAAAGGTTC CCATGTCCCA GAAGCTGCTT GAATATATTG TCGGCAATTT GGACGATAAC GGCTATTTAA CCCTTTCTTT AGAGGAAATA GGGAAGCAGC TCCAGCTTCC CCTTGAGGAA GTGGAAAAAG GCTTAGCGGT GATTCAAGGG CTGGACCCTT TGGGGGTGGG GGCAAGAAGC TTGGAAGAAT GTCTGTTGCT GCAGCTTCCC CTGCTGGCAG ACTACCCTCC GGAGCTGCCT GAATTTCTTA AGTATCTGGA GGATTTAGCT GCCGGTCGTT TGCAGAGGAT CGCCGCCCAG CTCAAAATTA CCCCCAGTCA GGTTCAGGAT ATGGCCGATT TAATCCGCAC CCTGGATCCT AAACCCGGCC GGAGCTTTGC CGGGACCGGC GAGGTGCGCT ATATCGTTCC CGACGTTGTG GTTGAAGAGG TTGAGGGCGA ATATATTATC CTGGTCAATG ATGTGACCGT ACCCCGTTTG GGAATTAATC AGGTCTACCG CAAAGCCTTA AGTCAGAATA ATGAATCAGA GATTCGCAAA TTTGTCGAGC AGAAACTCAA TGCGGCAGCC TGGCTGATTC GCAGTATCGA GCAAAGACGG CTCACTCTTT ATAAGGTTGC GGATGCTATT ATCAGACGCC AGGAAGAGTT TTTGCGGCGG GGCATCCGCT GTTTAAAACC CCTCAATCTC AAAGACATTG CGGAAGAGAT CGGGGTCCAC GAGTCCACGG TCAGCCGGGC TACGGCTAAT AAATATATCC AAACCCCCCG GGGGATTTTT GAGTTTAAGT TCTTTTTTGC TACGGGGCTG GGCAGTGAAC AGGGCATGGC CACGGAAGGA ATTAAACAAG CCCTGAAAGA GATCATTGCC GCCGAGGATC CCAAGAGTCC GTATTCCGAT CAAAAGCTTT CCGAGATTCT TAAAGAAAAG AATATGGAGA TTTCACGACG AACTGTGGCA AAATACCGGG ATGAACTGGG GATTCCGTCC ACGGCGCTGC GGAAACGCTA TTAG
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Protein sequence | MRIGYGLNLE QTQKLIMTPE LRQAIAVLQL SALELSGYVE QQMLENPLLD VIDDSADKSA DHTQEDSPAQ EKNEGAEEGP WDMNWEEYFQ HQEERISKEY DPDAGQSTRF EPFLAAGPSL QEHLLEQIHI QKVPMSQKLL EYIVGNLDDN GYLTLSLEEI GKQLQLPLEE VEKGLAVIQG LDPLGVGARS LEECLLLQLP LLADYPPELP EFLKYLEDLA AGRLQRIAAQ LKITPSQVQD MADLIRTLDP KPGRSFAGTG EVRYIVPDVV VEEVEGEYII LVNDVTVPRL GINQVYRKAL SQNNESEIRK FVEQKLNAAA WLIRSIEQRR LTLYKVADAI IRRQEEFLRR GIRCLKPLNL KDIAEEIGVH ESTVSRATAN KYIQTPRGIF EFKFFFATGL GSEQGMATEG IKQALKEIIA AEDPKSPYSD QKLSEILKEK NMEISRRTVA KYRDELGIPS TALRKRY
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