| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_4369 |
|---|
| Symbol | |
|---|
| ID | 7261394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 4636064 |
|---|
| End bp | 4637803 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643564286 |
|---|
| Product | Sigma 54 interacting domain protein |
|---|
| Protein accession | YP_002460810 |
|---|
| Protein GI | 219670375 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1067] Predicted ATP-dependent protease |
|---|
| TIGRFAM ID | [TIGR02902] ATP-dependent protease LonB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 86 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGAT TAACTGGAAT CGTGATGATG GTGCAGCTGG TCTTTGCAGT GATCATCGGT
TTATATTTTT GGGGATTGCT CAAATCCCAA CAAGGGAACA AGGTCTCCAT TGAACGGGAG
TCCAAGAAGG AGCTGGAGAA GCTGGAGAAG ATGCGCAAGA TTGCTCTGAC CACTCCTTTG
GCGGAAAAGA CCCGGCCCAC TCATTTTGAA GAGATTGTGG GCCAGCTCGA GGGAATTAAG
GCTCTTCGGG CCGCTCTCTG CGGACCGAAT CCCCAGCATG TCCTGATCTA TGGGCCTCCG
GGTGTGGGCA AGACGGCAGC AGCACGTCTG GTTCTTGAGG AAGCAAGGAA AAACCCTATG
TCTCCTTTTA AGGAAGATGC CAAGTTTATC GAAATCGATG GAGCTACCGC CCGTTTTGAT
GAGCGGGGGA TCGCCGATCC CTTGATTGGT TCGGTTCATG ACCCCATTTA TCAGGGGGCC
GGTGCTATGG GCATGGCGGG AATTCCCCAG CCCAAAGCCG GAGCTGTTAC CAAGGCTCAC
GGCGGTGTGC TTTTTATCGA TGAGATCGGG GAGCTGCATC CGATCCAAAT CAACAAACTG
CTTAAGGTGC TCGAAGATCG GAAGGTCATT TTGGAAAGTG CTTATTACAG CTCAGAGGAT
ACAAATATCC CGGTCCATAT TCATGATATC TTTCAAAACG GACTGCCGGC GGATTTCCGC
ATGGTGGGAG CGACCACACG GAGTCCTGAG GAGATTCCTC CTGCCATACG TTCCCGGTGT
ATGGAGGTGT TCTTTCGTTC TTTGCTGCCT GAAGAGATTG CTCAGATTGC CCGGGGGGCA
GCGGCAAAAA TGGAAACACC GATTACTCCC AGCGCTTTGA ATGTGGCAAA GCAGTATGCC
ACCAATGGGC GGGAGGCGGT GAACATCGTT CAATTGGCAG CGGGTGTGGC TCAGACGGAA
AAGAAATTGG AGATTAACGC CGCTACGGTA GAGTGGGTCG TGACTTCCGG ACAATATGCA
CCCAGGCCGG AACGCAAGGT CCCCTTGGTG GCGGAAGTGG GGTTGGTCAA CGGTTTAGCC
GTTTATGGTC CTAATATGGG AATGCTGATC GAGCTGGAGG TTACGGCCCA TCCTGTTGCA
CCTGGCACCG GAGAGCTTCT GGTTACGGGC ATCGTTGAAG AAGAGGAACA AGGGAGCAGC
TTTAGGAAGA CACGTCGTAA AAGCATGGCC AAAAGTTCCG TGGAAAATGT GCTCACCGTC
ATCCGGCGGC AATTAGGCAT ACATCCCCAT AACTATGATA TCCATGTCAA TTTCCCGGGA
GGAGTGCCTA TCGACGGACC TTCCGCAGGG ATCGCCATTG CCACAGCCGT GGTATCGGCT
ATCCGTAAAG AAAGGGTGGA TAATTATTTG GCCATGACTG GTGAGTTATC CATTCGGGGC
GGTGTAAAGC CGGTAGGTGG GATCGCTGCC AAGATTGAAG CAGCTCATCA GGCGGGATGC
CGCAGAGTAT TTATTCCCAA GGAAAATTGG CAGGAGCGCT TCAAGAGCTT TGCCGAAGGA
TTTGAAGTTA TTCCTGTGGA GACCCTTAAT GAAGTGTTGG CCAGTGCTCT TTTAGGTGAG
CAAAGCAGCG AAAAAACCGA GAAGCACCCC GCACTGGATG AGATCTTGTC CCGTCTGGAG
CTTAACCCTA AAGCTCCTGA CCGCTCAGTT AATTTGCCTG ACCAAGGGCA CTCATGCTAG
|
|---|
| Protein sequence | MAGLTGIVMM VQLVFAVIIG LYFWGLLKSQ QGNKVSIERE SKKELEKLEK MRKIALTTPL
AEKTRPTHFE EIVGQLEGIK ALRAALCGPN PQHVLIYGPP GVGKTAAARL VLEEARKNPM
SPFKEDAKFI EIDGATARFD ERGIADPLIG SVHDPIYQGA GAMGMAGIPQ PKAGAVTKAH
GGVLFIDEIG ELHPIQINKL LKVLEDRKVI LESAYYSSED TNIPVHIHDI FQNGLPADFR
MVGATTRSPE EIPPAIRSRC MEVFFRSLLP EEIAQIARGA AAKMETPITP SALNVAKQYA
TNGREAVNIV QLAAGVAQTE KKLEINAATV EWVVTSGQYA PRPERKVPLV AEVGLVNGLA
VYGPNMGMLI ELEVTAHPVA PGTGELLVTG IVEEEEQGSS FRKTRRKSMA KSSVENVLTV
IRRQLGIHPH NYDIHVNFPG GVPIDGPSAG IAIATAVVSA IRKERVDNYL AMTGELSIRG
GVKPVGGIAA KIEAAHQAGC RRVFIPKENW QERFKSFAEG FEVIPVETLN EVLASALLGE
QSSEKTEKHP ALDEILSRLE LNPKAPDRSV NLPDQGHSC
|
|---|
| |