Gene Dhaf_3959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3959 
Symbol 
ID7260979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp4201186 
End bp4201800 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content52% 
IMG OID643563880 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002460408 
Protein GI219669973 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.00461459 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA GCAATCGTCA ATTGCAGAAA GTGCAGACTA AAGAAACCCT TTTGAACAAA 
GCATACCAGC TGTTCTCCAG CCAGGGCATC ATGAATACCC GCATGTCCGA CATTGCCCAG 
GCGGCAGGAG TCTCTCACGG TACGGTATTC GCCCATTTTC AGACCCAGGA AATGCTGATC 
ACGGAAGTGA TCGAAACCTA TGGAGAGAAA ATTGCCCGGC GTACCCATGA GGCGGCAGGC 
ACCTGCGAGC ATATGGAAGA ACTTCTGGCG GCACATCTGG CCGGAATCGG GGAATTTGAA 
CCCTTTTATG CCAGGCTGGT GATCGAGAAC CGGCTGTTGC CGCCTGAGGC AAGGGATGTT 
TGGGTTTCCA TTCAATCCGC TATTTCCTTT CACTTCAGCC AGGTGGCCCA GCGGGAAATA 
GGGTCGGGTC AGAGTATCGA CCTTCCCCTC TATTTCCTCT TCAATACTTG GGTAGGGTTG 
GTCCATTATT ATCTGGTCAA CGGAGATTTG TTTGCCCCGG AAGGCAATGT GGTGGGCCGT 
TACGGTGATA CCCTGGTGGA TCATTATATG AAGATGATCC GCAGGGATGG GGGTAAAGGA 
GGGGAGAAGG AATGA
 
Protein sequence
MKKSNRQLQK VQTKETLLNK AYQLFSSQGI MNTRMSDIAQ AAGVSHGTVF AHFQTQEMLI 
TEVIETYGEK IARRTHEAAG TCEHMEELLA AHLAGIGEFE PFYARLVIEN RLLPPEARDV 
WVSIQSAISF HFSQVAQREI GSGQSIDLPL YFLFNTWVGL VHYYLVNGDL FAPEGNVVGR 
YGDTLVDHYM KMIRRDGGKG GEKE