Gene Dhaf_3533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3533 
Symbol 
ID7260551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp3759968 
End bp3761050 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content51% 
IMG OID643563456 
Product3-dehydroquinate synthase 
Protein accessionYP_002459987 
Protein GI219669552 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.87546 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGGAC AGAGGATTGA TGTTGCCTCC GTGAAGCCCT ACCCTGTTTT CCTGGGGGCC 
AGGCTGGAGG AGCTGGGTGA CTATCTGACC ACCCGCATCG GAGCTGGGGA ACATCTTCTG 
GTGATTACTC ACCCTAATGT CGGCGATTAC TATCTGGATA CTTTGCAAAA AGGGCTAAGC 
TCCTTTATGG TCAATACCCT GATTGTACCT CAGGGTGAGG ATGAGAAATC CCTGGACCGC 
CTCAGTGATT TAACCAGTGA AGCCATTGCC TGCGGCGCGG ATCGCAAGAC CGTGGTCTTG 
GCTTTGGGGG GAGGGGTTAT TGGAGATTTG GCCGGCTTCT TCGCCAGTGT CTTTATGCGG 
GGAATGCGTT ATGTCCAAAT TCCCACCACC CTTCTGGCGA TGGTGGATAG CAGCATCGGC 
GGTAAAGTTG CGGTAAATCA TGCTGCAGGC AAGAACCTGC TGGGAGATTT TTACCCGCCT 
CTGGCTGTAT GGACAGATTT TAGTACATTA GAGACCCTGC CCTGGGAAGA AATGCTTAAT 
GGTCTGGCAG AGACTATCAA GCATGCTGTC ATTGCCGATG AAGAGCTTCT CTCTTTTATC 
GAAAAACACC AGGAAGAAAT CATGGCGCGG AAGCCTGAGC TATACAAGGA GTTGACTTCC 
CGCTCCTCGG CGGTTAAAGT CAGACTGGTC TCTGAGGACG AGACGGAACA GGGCAAGAGG 
ATGTTTCTTA ATTACGGGCA TAGCTTTGGT CATGCTCTTG AGGCTGAGGT GGCCTACCAA 
GGGATTACCC ATGGACAGGG TGTCAGCATC GGCATGGTAG CAGCTGCCCA TCTGGCCCAA 
GAACGGGGAC TGATGAACAG TGGAGAAGTG GAACGCTTGA TTAAGCTTCT CAAAGCTTTC 
GGTTTGCCGG TAACTGTCAG AGCTAAGAAT CCCCGAGTGT TAACCGATCT TATGGGGGCA 
GATAAAAAGA ATTACAAAGG GCAGAAAGTT TTGGTCCTGC CTAAAGGGAT AGGACAGGGG 
ATCGTGATTC GTGACGCCAA CGATGAGGAA ATTCTAAGAG CTTGGGATAA GGTTATTGAG 
TGA
 
Protein sequence
MQGQRIDVAS VKPYPVFLGA RLEELGDYLT TRIGAGEHLL VITHPNVGDY YLDTLQKGLS 
SFMVNTLIVP QGEDEKSLDR LSDLTSEAIA CGADRKTVVL ALGGGVIGDL AGFFASVFMR 
GMRYVQIPTT LLAMVDSSIG GKVAVNHAAG KNLLGDFYPP LAVWTDFSTL ETLPWEEMLN 
GLAETIKHAV IADEELLSFI EKHQEEIMAR KPELYKELTS RSSAVKVRLV SEDETEQGKR 
MFLNYGHSFG HALEAEVAYQ GITHGQGVSI GMVAAAHLAQ ERGLMNSGEV ERLIKLLKAF 
GLPVTVRAKN PRVLTDLMGA DKKNYKGQKV LVLPKGIGQG IVIRDANDEE ILRAWDKVIE