| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1885 |
|---|
| Symbol | |
|---|
| ID | 7258854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 2016527 |
|---|
| End bp | 2017891 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643561782 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002458362 |
|---|
| Protein GI | 219667927 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.135874 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT TCAGCATTTC CGAAGTCATG GATTCCTTTG GGGTCAATAA GTTTACATGG
TCTATCTTCT TCTTCTTGGG ATTGGCGATG GTTTTTGATG GGTATGACTA TATGATCGTC
TCCTATACTA TGCCCCAGAT TTCTGCGGAA TGGGGATTAA GCGCTGTGGA AAAAGGCAGC
TTATCCTCAT GGAGCCTTTT TGGCTTAATT ATTGGAGGTG CCATATCCGG TATAGTCTCA
GACAAGATAG GGCGGAAAAG GACCTTAGTC TATTCTATCG CTATCTATTC CTTGCTGAAC
ATTCCGATTT TCTTTGCACC AAGCTTCGGC TTCTATGCTT TATTCCGGGT GTTGGCCGGC
CTTGGCTTGG GAGCCTGTAT TCCGGTCGTC ACAACGATCT TCTCTGAATC CACTCCTACC
AACCGCCGCG CCCTTTTCAT TACCTTTGGG ATGGCCTGGA TGATTGTCGG TTGGGTTTTA
GCAGGCTTGG TGGCTACCTA TCTGGTTCCC CGGGTGGGCT GGAGATGGTG CTATCTGGTA
GGCGGTTTCC CCTTCATCTA CTCGATCTTC CTGCACTTCA AAATGAAAGA ATCCGTCTAT
TGGTTAGCCA ACAAAGGGAG AAATGAAGAT GCGGTCAAGA GACTTCAGGA AATTGAGAAG
GTTGCAACGG GCAAGGTTAC CAATTGGGAT CCCAACGCCC TGGTTGTCCC TCCAAAATCC
AAAGTCGTCG GACCGAAGGC CCTTTTCTCC AAAACTTACC GCATGACAAC GGCCGGTGTT
TGGATTACCT ATTTCTGCGG TTGCTTTACG GTCTATGGCA TTAACGCCTG GCTGCCCTCT
TTAATGCTGG AAAAAGGTCT GCAGCTGTCC TCAGCCTATG GACTATCCAT TGCTCAAAAT
GCCGCTGCGG TCATTGCCAA CTGTTCAACA GGCTTTGTGG CTGAAGTGAT TGGCCGCAGA
AAAAATCTGA TCGGCAGCTA TGGATTAGGA ATTGTGGCTA TTTTGATCAT GGCTTTCGTG
GGCAGTAGTT TTTGGGCAAT CTTAGCGGCT AATATTTTCC TTGGCTTTGC CATCAACTAC
TCCATTACAG CAGTTCAGCC GCTGATGGCG GAGGGATATC CCACAGATAT CCGCAACACA
GGGGTGTCCT GGTGTCAAGC CTTTGGCCGG CTGGGCGGAG CCCTTGCCCC CATTGTGGCC
GGTATGATTA TCGGTTTAAA TCTGGGTTAC TCAAGTGCCT TTCTTTTCTA TGTCGTGCCC
TTGCTCTTCG GTTTACTGGC GGCCTTCCTC TTGATTAGAA ATGAGACCAA AGGCAAGAGT
ATCGATCAAA TTCAAGAAGA AAATGTTTTA AAGGCCGGCA GTTAA
|
|---|
| Protein sequence | MKNFSISEVM DSFGVNKFTW SIFFFLGLAM VFDGYDYMIV SYTMPQISAE WGLSAVEKGS
LSSWSLFGLI IGGAISGIVS DKIGRKRTLV YSIAIYSLLN IPIFFAPSFG FYALFRVLAG
LGLGACIPVV TTIFSESTPT NRRALFITFG MAWMIVGWVL AGLVATYLVP RVGWRWCYLV
GGFPFIYSIF LHFKMKESVY WLANKGRNED AVKRLQEIEK VATGKVTNWD PNALVVPPKS
KVVGPKALFS KTYRMTTAGV WITYFCGCFT VYGINAWLPS LMLEKGLQLS SAYGLSIAQN
AAAVIANCST GFVAEVIGRR KNLIGSYGLG IVAILIMAFV GSSFWAILAA NIFLGFAINY
SITAVQPLMA EGYPTDIRNT GVSWCQAFGR LGGALAPIVA GMIIGLNLGY SSAFLFYVVP
LLFGLLAAFL LIRNETKGKS IDQIQEENVL KAGS
|
|---|
| |