Gene Dhaf_1417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_1417 
Symbol 
ID7258387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand+ 
Start bp1521656 
End bp1522327 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content50% 
IMG OID643561329 
ProductPeptidoglycan-binding LysM 
Protein accessionYP_002457909 
Protein GI219667474 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3170] Tfp pilus assembly protein FimV 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTATA GCATTGAACT CAGCTTCAAC AACCGGGACG AATCCTTCGA GCTTCCCGTC 
ATGCCGGGAA GCCTTGACGC CAGTAAGTCC GGCAACAACA AAACTTATGA CATCATCGCC 
CTGGGTGAGA TCAACATTAT TAAGAATCCC CAGCGCATTG AATACGGATT CAGCAGCATC 
TTTCCAGCCC AGCGCTATCC CTTTGTGACA GTTCAAACAC TCTTGCAGCC TATCGAATAT 
GTCCAGCTTA TCATCAGGTG GATGGAGTCT AAACAACCCA TCCGCTTTAT TTTTACCTCC 
GACCGATTTG AGATCAACAC TTTGGCTAGT ATTGAGAGCT TTGACTGGGA AGAGGTTGCC 
GGTGGTTCAG GGGATCTTGA ATACTCCCTT AAGCTCAAAA GTTACGTCCC CTATGCGGCA 
CAAAAGGTGC CTATAGAAGA TCTTATTGAT AAATCAGCGT CCACAGTGGC AGTGCCGCCT 
CCGGCACCGG TCAGGCCCAA TGAAACCAAG CCCCCTAAGA CCTATACACT GGTGGCTGGG 
GATACCCTGT GGGCGGTGGC TCAGAAGCAT TTGGGCAATG GTGCCCGCTG GCCGGAAATA 
CAAAAGCTAA ATGACATCAC GGACGCGGAA ATTAGGCGGC TGCAGATCGG CCGGGTGTTG 
AAACTGCCAT AA
 
Protein sequence
MSYSIELSFN NRDESFELPV MPGSLDASKS GNNKTYDIIA LGEINIIKNP QRIEYGFSSI 
FPAQRYPFVT VQTLLQPIEY VQLIIRWMES KQPIRFIFTS DRFEINTLAS IESFDWEEVA 
GGSGDLEYSL KLKSYVPYAA QKVPIEDLID KSASTVAVPP PAPVRPNETK PPKTYTLVAG 
DTLWAVAQKH LGNGARWPEI QKLNDITDAE IRRLQIGRVL KLP