Gene Dhaf_1293 details

Gene Information

• Locus tag: Dhaf_1293
• ID: 7258263
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 1391403
• End bp: 1393229
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 643561205
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_002457785
• Protein GI: 219667350
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 52
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGAAA AACCAACGCC GAAGAAACCG CTTATCTATT ATTCCCTGAT TGCCTTGTTG 
ATTCTTCTGC TTCTGAATGC TTTTGTGTTT CCGCACTTGC TGAAAAGACA GGTTACCCAA 
GTGGATTATG GCTCTTTCCT GTCCTATCTT GAGAGTGGAA CGATTTCGGA AGTCGAAGTT 
CAGGATAATC AGATTGCCTT TATGACCAAG GATTCAACAG GCAAAGAAAC GATTTTTGTT 
ACGGGCGCCA TGGCAGACCC TGAATTGGTT AATCGTCTTA AGGCTGCCGG GGTGGATAAA 
TATTCTCAGG TTATCCCCAA GGAGAACTCC CCCCTCATGA ACATTCTCTT AACCTGGATT 
CTCCCCATGA TTCTCTTATT TGGACTTTGG ATGCTGCTGG GAAATCTGAT GCAGAGAAAG 
ATGGGCGGCG GCATGAACGC CATGACCTTT GGCAAGAGCA ATGCTAAAAT CTACGTTCAA 
GCCCAGACAG GTAAGACCTT TGCCGATGTG GCCGGTCAGG ATGAGGCGAA AGAAGCTCTG 
ACTGAGATCG TGGATTTTCT TCACGACCCC AGCCGTTATG CCGCCATTGG AGCCGATCTG 
CCGAAAGGGG CTCTCCTGGT GGGTCCTCCG GGAACGGGGA AGACCTTGCT GGCCAAGGCC 
GTTGCCGGAG AAGCAAAAGT GCCCTTTTTC TCCATATCCG GAAGTGAATT TGTAGAGATG 
TTTGTGGGTA TGGGCGCGGC CAAAGTCAGA GATCTATTTA AACAAGCCAA TGAAAAAGCC 
CCCTGCATCG TTTTTATCGA TGAGATTGAT ACCATCGGCA AAAAACGGGA TGGAGGCTCC 
TTCGGCGGAG GCAATGATGA ACGGGAGCAA ACCTTGAACC AACTTCTGTC CGAGATGGAT 
GGTTTTGACG GCAAGAAGGG TGTGGTGATT CTCGCCGCTA CCAACCGGCC GGAGTCCTTA 
GACAAGGCTT TGCTGCGTCC GGGGCGCTTC GATCGCCGGA TCCCTGTGGA GCTTCCGGAT 
TTGGCAGGCC GGGAAGCCAT CCTGAGAGTT CATGGGCAAA AGGTAAAAAT GGACTCCCCT 
ATCGACTTTA AAGCCATCGC CCGGGCCACT GCCGGAGCAT CCGGAGCGGA ATTAGCCAAT 
ATCATTAATG AAGGAGCTTT ACGGGCTGTT CGCTGCGGGA GAAGCCGGGT GAATCAAAGT 
GATTTGGAGG AGTCTGTGGA AGTTGTGATT GCCGGTTATC AGCGGAAGGG GGCAGTGATT 
TCTCATCGCG AGAAAGAGAT TATTGCTTTC CACGAGATTG GCCATGCTTT AGTAGCCACC 
AAACAAACGG ACTCTGCTCC TGTGCATAAG ATTACCATTA TTCCAAGGAC TTCCGGGGCC 
TTAGGCTATA CCATGCAAGT GGAAGAAGAT GAGCGCGTTC TCATGAGCAA AGAAGAGGCC 
TTCAATAAAA TCACCACCTT TACAGGGGGC CGGGCAGCCG AAGAATTGAT CTTTGGAACC 
TATACTTCAG GAGCCTCCAA TGATATTGAA CAAGCCACCA AAATTGCCCG GGCCATGGTT 
ACCCGTCTGG GGATGAGCAA GAATTTCGAT ATGATGGCTT TAGAGACAGT GAATAATCCT 
TACCTTGGCG GCGATACTTC CTTGATGTGT TCTCCGGAAA CCGCAGCCAG GATTGATGAG 
GAGATTTTAT CCATTATCAA AAGCGCCCAC AAAAAAGCCT TTGAAATTTT AAAAGAAAAT 
ATTGAAAAGC TTCATGAATT AGCACGTTAT TTGTTGGAAA AGGAAACCAT CACCGGAGAA 
GAATTTATGG CGGTGCTCTC CAGGTAG 

 

Protein sequence

MNEKPTPKKP LIYYSLIALL ILLLLNAFVF PHLLKRQVTQ VDYGSFLSYL ESGTISEVEV 
QDNQIAFMTK DSTGKETIFV TGAMADPELV NRLKAAGVDK YSQVIPKENS PLMNILLTWI 
LPMILLFGLW MLLGNLMQRK MGGGMNAMTF GKSNAKIYVQ AQTGKTFADV AGQDEAKEAL 
TEIVDFLHDP SRYAAIGADL PKGALLVGPP GTGKTLLAKA VAGEAKVPFF SISGSEFVEM 
FVGMGAAKVR DLFKQANEKA PCIVFIDEID TIGKKRDGGS FGGGNDEREQ TLNQLLSEMD 
GFDGKKGVVI LAATNRPESL DKALLRPGRF DRRIPVELPD LAGREAILRV HGQKVKMDSP 
IDFKAIARAT AGASGAELAN IINEGALRAV RCGRSRVNQS DLEESVEVVI AGYQRKGAVI 
SHREKEIIAF HEIGHALVAT KQTDSAPVHK ITIIPRTSGA LGYTMQVEED ERVLMSKEEA 
FNKITTFTGG RAAEELIFGT YTSGASNDIE QATKIARAMV TRLGMSKNFD MMALETVNNP 
YLGGDTSLMC SPETAARIDE EILSIIKSAH KKAFEILKEN IEKLHELARY LLEKETITGE 
EFMAVLSR