| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_0098 |
|---|
| Symbol | |
|---|
| ID | 7257047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 99733 |
|---|
| End bp | 100689 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643560001 |
|---|
| Product | Geranylgeranyl pyrophosphate synthase-like protein |
|---|
| Protein accession | YP_002456603 |
|---|
| Protein GI | 219666168 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTC AGCTTGATCA GATTTTCTTC AGAGAAATTG ACAGTGTATT GGCTAAGGCC
CGACTGGATG CGGAAATGGA ACGGCTGATC CGGCTCTCCC TCAACGCAGA CAGCCCCACC
GGGGAATTAT TCCGCTGGGC CCACTTAACG CGTATGAGCT GTGAATGTGC GGGCGGAGAT
CCGGAAGACG CGTTGCCGGG TGCCATTGGA ATGGAGTTTT TTGCCCTGGC CCTGGATATT
TTCGATGACG TGCAGGATCA GGACAATGAA AATATGCCCT GGCGCCAGCT TCCGGATGCT
CAGGCCATCA ATCTGGCCAT CTGCTTGCTC ATGCTCAGTG ATGAGGCCAT TTCTGCTATT
CCGGACAACA GGCTGTTTCG AGAGGTTGCG GCTACTTTGC ACCGTACGGG AATATGCGCC
AGCAATGGGC AATTCCGGGA GTTTATATAT GACGACCGAC AGCAGGTATC GTTTGAGCAA
TACTTTGAGA TGGCGGGGCA AAAGGCCGGA AGCTTGACCG CCTGCGCCTG TAAAATTGGA
GCCATCTTAG GCGGGGCAGA AGAACCCGTA ATACATGGCT TGGAACAGTT TGGGATCAAT
CTGGGGATCC TGAATCAAAT CAGAAACGAT TTAAATGATT TCCTGGATTT TTTCAGAAAA
AGTGATTTTG TGAACAACAA AAAGACCCTG CCTTATGTTT ACCTGTTAAA TACCCTGAAA
GCGGAAGCCG CCGAGCGGTT TAAGGAACTG ACCCAGGGGC ATGGCGAAGG AGCCTATGGG
TTCGGAGATA GAGAAAGGGA ATATGTCAGA CAACTGGCAG CTGAAGAAGG AGTTGCGCCC
TACTGCACCG TAATGTTTGA AATTTATTGC CAAAAAGCGA GGGAAATTTT GGAGGGAATT
CCTGTTCCCG AAAAAAATAA GGAGAACATG AAAGAACTTG TTGGAGAAAG TGTTTAA
|
|---|
| Protein sequence | MNLQLDQIFF REIDSVLAKA RLDAEMERLI RLSLNADSPT GELFRWAHLT RMSCECAGGD
PEDALPGAIG MEFFALALDI FDDVQDQDNE NMPWRQLPDA QAINLAICLL MLSDEAISAI
PDNRLFREVA ATLHRTGICA SNGQFREFIY DDRQQVSFEQ YFEMAGQKAG SLTACACKIG
AILGGAEEPV IHGLEQFGIN LGILNQIRND LNDFLDFFRK SDFVNNKKTL PYVYLLNTLK
AEAAERFKEL TQGHGEGAYG FGDREREYVR QLAAEEGVAP YCTVMFEIYC QKAREILEGI
PVPEKNKENM KELVGESV
|
|---|
| |