| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_3108 |
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| Symbol | |
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| ID | 7175054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 3919575 |
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| End bp | 3920606 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 643541645 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_002437513 |
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| Protein GI | 218888192 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 0.0121231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTCTG GGCTGGGCGC GCGGCCCGAA CACGTGGCGG CGGCCCTGCG CCGCAGGCCC
GTGCTGCCCC CGGGCTGGCG CGACCTGACC GTACCCGTTC CCCCGGCACA GAACGCGGCG
CTGCCCGCGC CGTTGCCGCA GCTGCCCTCG TGTACCGCGC AGTGCCTGCC GCGCTGGCGG
CTGGTGCTGG AGGCGCGCAA CATTCCGTTC ATGGCCGTGC GACGGGGCGA GCGTCAGCAC
TTCTTCGTGC CCGCTCTGTA CGAGCGGCTG GCCCGGCAGG AACTGCTGGC TGCCGAGGGC
GAGGACGCCG CCGCCCGTGC CCGCCCCCCC GCTCCGCCCC CCGCCCCCCT GCGCGCCAAC
GTGCACCTGA CCCTGCTGGG TCTGCTGCTG CTGGCCCTGT GGCACGGGGT GCGCATGGGC
TGGTGGTGGG ACATGCATCT GCCCCTGCCG GACCTGGACC CCGACGTATG GCGCGATGCC
GGGGCCATGG ACGTCTATTA CACCGTGGCG CGCGGGCAGT GGTACCGGGT GGTCACGGCG
CTGACCCTGC ACGCCGACAG CCCGCACCTG TTCGGCAACA TCCTGTTCGG CAGCTTTTTT
CTGGTTCCCC TGTGCCGCCG CGTGGGCAGC GGTCCCGGAT GGCTGCTGAC CATCCTGGCG
GGCGCTGGCG GCAACGTGCT GAACGCGCTG GCGCGCCCAG CCTCGCACGT CAGCCTGGGC
TTTTCCACGG CGCTGTTCGG CGCGGTGGGC GTGCTGTCCG GGCTGCTGGC GGTGGAGGGC
GGCTGGAGCG GCTGGCGGCG CATGGTGGTG CCGCTGGCTG CGGGACTGGC CATTCTGGGC
ATGCTGGGCA GCGAAGGGGA ACGCACCGAC CTTGGCGCGC ACCTGTTCGG CCTGGTGGCA
GGTGTGGCGG TGGGCATGGC GGCGCAGGGG CTGCGCGAAT GGCTCGGTCC GCCGCCGCGC
TGGCTGGAAT GGCTGGCGGG CGCTGCCTGC GCTGCGTTGC TGGCCGGATG CTGGATGCTG
GCGCTGCGGT AA
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| Protein sequence | MASGLGARPE HVAAALRRRP VLPPGWRDLT VPVPPAQNAA LPAPLPQLPS CTAQCLPRWR
LVLEARNIPF MAVRRGERQH FFVPALYERL ARQELLAAEG EDAAARARPP APPPAPLRAN
VHLTLLGLLL LALWHGVRMG WWWDMHLPLP DLDPDVWRDA GAMDVYYTVA RGQWYRVVTA
LTLHADSPHL FGNILFGSFF LVPLCRRVGS GPGWLLTILA GAGGNVLNAL ARPASHVSLG
FSTALFGAVG VLSGLLAVEG GWSGWRRMVV PLAAGLAILG MLGSEGERTD LGAHLFGLVA
GVAVGMAAQG LREWLGPPPR WLEWLAGAAC AALLAGCWML ALR
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