| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1027 |
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| Symbol | |
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| ID | 7172923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 1245893 |
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| End bp | 1247551 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643539534 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_002435450 |
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| Protein GI | 218886129 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 0.40658 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTCCA TGAGAAGACA CGTTCCCCTG GCCCTCGTCG TCCTGCTTGC GGCGGCATTC
ATCCTTGGCA CCCTGGGCTG CGCCAAGCGC AAGGAAGAAG CCGACCCGTT CTTCGACAAA
TGGAAGACCA TGGCCACCAA TTCCACGGGC TACTCGCCCT CGCGCGAAAC ACGCGACATC
AAGCCTCGCG CCGTGCTGAA GCAGGACAAG GTAGCGGAGG AACAGGTGGA GCAGGCCCGG
CCCCTGCCCA GCGTGCCGGT AACGCTCAAG CTGCACAACG TGGACGTGGG CGTGGCCCTG
CGCAGCCTGG CCGCCGCCGC GGGCAAGAAC ATCATCCTCA GCCCCGGCGT GAAGGGCTCG
GTCAACGTCA ACGTCAACCG GGTGCCGTGG TCCGACGTGT TCAAGGGCAT GCTGGACAGC
AACGGGCTGG ACTACGCGTG GCAGGGCGAA CTGATCAAGG TCATAACCAT GGCCGACAAG
AAGGTGGAGC TTGAACACGC CACGCTGGAA AACCAGCGCA TGGCCCAGAA GCTGAAGGGC
CGCAAGGTGG GCCCGATGGT CACCACCGTG CTCGACGTGC GCTACGCGGA AGCGGCGGAA
TTGAAAAAGA ACCTGGAAGG CTTTCTGTCC AAGGACGACG GCGGCAAGCC CGTGGGTTCC
GTGGTGGTGG ACACCTTCAC CAACTCGCTG ATCATCCAGG CCGTGGAAGA CGACCAGAAG
AAGCTGATGA CCCTGGTTTC CAACCTCGAC AAGCCCCGCG CGCAAATCCA GCTCAAGGCG
CACATCGTGG AAGCCACCAA GGAAACCGCG CGTGAACTGG GCATCCAGTG GGGCGGCGTG
AACCGGGTAG GCAACATGGC GGGCAGCAAC GACCTGTGGG TCACCCCCGG CGGCACTGGC
GGCACGGCGG GCACCAGCCC GTACAACGGC AGCTACACGC CCATCTTCGG CGCTCCCGGC
ATCAGCGGGC AGGGCAACGG CATCAACTTC CCCATCGACA CCACGGGCAA GTCGGGCGCG
GGCTCGCTGG GCCTCATGTT CGGCACCATT GGCGGCAACA TGCTGGAAAT GCAGCTTTCC
GCCTTGCAGG AAAGCAGCAA GATCAACATC CTGTCATCGC CGTCCATCTC CACGCTGGAT
AACCAGATGG CCTACACCGA AAACGGCGAA AAGGTGCCCT ACGTCTCCAC CAATGCCCAG
GGCGACCGCG AAGTGAAGTT CGAGGACGCC GTGCTGCGCC TTGAAATCAC CCCCCACGTC
ATCGACGACA AGAACCTGAA GCTGAAGGTG CTGGTAAAGA AGGACGAAGT GGACCTTACC
CGCACGGTGG AAGGCAACCC CTTCATCATC AAGAAGCAGA CGGAAACCAC CCTTATCGTG
CAGGACGGCG AAACCATCGT CATTTCCGGC CTGACCAAGG ACCGCAAGAG CACGGGCCGC
AGCGGCGTGC CCGGCCTGCA CGACGTGGAA GGGCTGGGCT GGCTGTTCGG CAGCGATTCC
AAGGCCAGCA AGCTTGAAGA AGTGCTGATC TTCATCACTC CGGCGGTGCT GCCCTACCGC
GAAATGGCGG AGCAGGGCGC CACGCAACAG ATCACGGTGC AGCCCGGCCA GTTGGGCCAG
GCCCCCACGG TCGATCAGCA GCTGCTGCCC CGCCAGTAG
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| Protein sequence | MRSMRRHVPL ALVVLLAAAF ILGTLGCAKR KEEADPFFDK WKTMATNSTG YSPSRETRDI
KPRAVLKQDK VAEEQVEQAR PLPSVPVTLK LHNVDVGVAL RSLAAAAGKN IILSPGVKGS
VNVNVNRVPW SDVFKGMLDS NGLDYAWQGE LIKVITMADK KVELEHATLE NQRMAQKLKG
RKVGPMVTTV LDVRYAEAAE LKKNLEGFLS KDDGGKPVGS VVVDTFTNSL IIQAVEDDQK
KLMTLVSNLD KPRAQIQLKA HIVEATKETA RELGIQWGGV NRVGNMAGSN DLWVTPGGTG
GTAGTSPYNG SYTPIFGAPG ISGQGNGINF PIDTTGKSGA GSLGLMFGTI GGNMLEMQLS
ALQESSKINI LSSPSISTLD NQMAYTENGE KVPYVSTNAQ GDREVKFEDA VLRLEITPHV
IDDKNLKLKV LVKKDEVDLT RTVEGNPFII KKQTETTLIV QDGETIVISG LTKDRKSTGR
SGVPGLHDVE GLGWLFGSDS KASKLEEVLI FITPAVLPYR EMAEQGATQQ ITVQPGQLGQ
APTVDQQLLP RQ
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