| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0691 |
|---|
| Symbol | |
|---|
| ID | 7172578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 833371 |
|---|
| End bp | 836022 |
|---|
| Gene Length | 2652 bp |
|---|
| Protein Length | 883 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643539191 |
|---|
| Product | PEP-CTERM system TPR-repeat lipoprotein |
|---|
| Protein accession | YP_002435116 |
|---|
| Protein GI | 218885795 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase
[COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 0.953113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGGAACA ATCTTCGCTG GATCGTTTGC TGGATCATGG TCATGCTGCC CATTTCGGGT
TGCGGAACGG ACAAGGCCGG GGACTTCCTG TCCGAAGGGC GCAAGCTGAT GGGGCAAGGC
AACCCGGCTG GCGCCGTGGT GCTTTTCAAG AATGCGCTGG AAAAGGACCC CGGCGACTAC
ACGCTGCATC TTGAACTGGG CCGCGCCTAC TATGCCCTTG GCAAGATTGA TCTGGCCGAG
AACGAGCTTC AGAAGTGCTA CCGGCAGCAG CCGAATGACC CGGCGCTGAA TCTCGCCCTG
GGCGAAGTGT ACGTTGCGCG CAACCTCCCG GACCAGGCGC TTGTTCATGT CCAGAAGTTC
GAGGAGCATG CCGGTGCCAC CGCTGCCTCG CGCGAGCTGG CCGGCCTTGC GTATGGCCAG
GCCAGGCGCA CGGAAGAAGC GCGCAAGGCC CTGGAGCAGG CATTCGGCCT TGATCCCAAG
CGCATATCCG CTCGTTTGGC GCTGGGGCGC CTTTTCCTGT ACCGGGGCGA CCTGCGCGCG
GCTTCTGCCG TGCTGCAAGA GGCCCTTGCC GTCGGCCCCG ACGACACGGC GGCCCTTGCG
CTTCAGGGTG ACATCCTGTT GCGGCAGGGA GAGACGGACA AGGCGCTTTC CGTGTTCCGC
AAGGTCACCC AGTTGACCCC CCGTGATGAA AACGCCCGGT ACATGGTGGG CGTGCTCCAG
CTGCAGCTTG GCAACGTGGC CGAGGCCGCG CAGACGGCCG CCGCCATGCG CGCGGACTTC
AAGGACAGCG CCTTGGTGTT CTTGTTGGAA GGCGCGCTGG CCGCCACCAG GAAGGACTTC
GCCGAGGCCG CCACCCTTCT GCAACGCAGC GTGGCGCTGC GCCCCAGCGT GGAGGGCTAC
TACAAGCTGG GGATGGCGCT CTATGCCAAG GGCGATCTGG AAATGGCCCT GAGCCAGTTC
AACACGGTGC TGGCATCCAC CCCGGACCAT GACGCGGCCC GGCGGATGGT ATGCTCCATC
CTGCTTGCCC AGCGCCGCCT GGACGAGGCG ATGCAGGAGG CCCGGAAGCT TCTCGACAGG
AATCCGGGAG ACGCCAACGC GCATTTCCTG ATGGCCGGGG TGCTTCTGGC CGGAAAGGAC
AAGCGAGGCG CCGAGAAGGA GCTGGAGGCC GGTCTGGCCC AGGAGCCGGC GCATGTCGGC
GCCCTGTTGC AGCTCAGCAC GCTGAAGCAG TCCGAAGGAA GAATGGACGA GGCCCTGGCG
GACCTGCGCA CCGCCGTGGT CGCGGCCCCG GACAACATCA TTGCCCGCAA CGCGCTGTAT
GCCTTCCACT TGGGCCGCGG TGAAACGGAC AAGGCGGAGA AGGTCGTCCT CGAAGGGGTG
AACAACACCC CGCAGGACGC CGTGCTGTAT ACGATGCTTG TCCCTCTCTA TGCCAATGCG
GGCAAGGAGG CCAAGGCCCT TGACGCGGTG GCGAAAGCCC ACCGGGCCGA TCCGGCATTT
GCCGATGCAT ATCTTGCTGG TCTGCGTGTC CATGCCGGGG CGGGCAGGGT GGAGCAGGCG
CTGGCCGAGA GCGAGGCGTA TCTTGCCGTT TCGCCCGACT CTCCGGGCTT CCTTGTGGCG
TCCGGGGCGC TGCTTGATCT GCTGGGCAGG ACGACCGAGG CGGATGCGCG GTTCGACAGG
GCGCTCGCGA GCAAGGACCG CCAGGTTGTG CTTGTGGTTG CCAACCGTGC CGCTGCGACA
GGGCGCACCG ACAAGGCAAG GCAGGTGCTG GAGGCGGCGC TGCAGGCTGA CAACCAGGAA
GACCTGCGCG AGGCGCTCGC CGTGCTGCTG GTGCGGGAGA ACAAGCCGGA TGCCGCGCTT
GCCCTTTACA GCAGCATCGA GGCGCAACGA CCGCGCGAGG CCCTGATTGG CCGCTATCGC
CTGCTTACCC ACATGCGGCG CAACCAGGAG GCCGCCGAGA CGGCGCGCAC GCTTGGCCTG
CGGGATGGCG GATCGTCGTT GCCGACCATG CTCGAAGCCT ATGCGCTTGA ACGCATGCAG
CAGCGCGAAC AGGGAATCCA GCTTCTTGAT GCGGCGTATC GCCAGAAGGG AAGCACGGAT
CTGTTGCTGG CGATGGGGGG AATGCTGGAG AGAGGCGGGG ATCTTGCCCG GGCCGAAGCC
TGCTACAAGG ACGCCCTGAA GGTCCAGCCC GACGATGTGC CGACCCTTCT GGCCATGGGC
ACGCTGCAGA TGCGCCGCAA GGCGTACTCC AAGTCCGTTC CCGTCTACGA AAAGGCATTG
CGCCTGGCTC CGGCCAATGT CGTGGCCATG AACAACCTGG CCATGGCCTA CTTGCAACAG
AACGGCCGGG CGCAGATGGC CTTGCAGCTG GCCCTTCAGG CGTACACGCA TTCTCCCGAG
AATCCCGAGG TGCTGGATAC CCTTGGCGCC TGCATGATGG CCAACGGCAG GGCCGACGAG
GCCACCCGGG CATATGGCCG CGCGGTGGCG GCGGCGCCTG ACAACCCTAC GCTGCGCTAC
CACCATGCAG AGGCGCACTT CAAGGCCGGG CGCAAGGACA AGGCCGCGGA AGAACTGCGC
GTGGCCCTTC AGACCCCCGA CTTTCCCGAG GCGGCGCAAG CCAGGGAACT GCTGCGCAAA
GCCGGCAACT AA
|
|---|
| Protein sequence | MWNNLRWIVC WIMVMLPISG CGTDKAGDFL SEGRKLMGQG NPAGAVVLFK NALEKDPGDY
TLHLELGRAY YALGKIDLAE NELQKCYRQQ PNDPALNLAL GEVYVARNLP DQALVHVQKF
EEHAGATAAS RELAGLAYGQ ARRTEEARKA LEQAFGLDPK RISARLALGR LFLYRGDLRA
ASAVLQEALA VGPDDTAALA LQGDILLRQG ETDKALSVFR KVTQLTPRDE NARYMVGVLQ
LQLGNVAEAA QTAAAMRADF KDSALVFLLE GALAATRKDF AEAATLLQRS VALRPSVEGY
YKLGMALYAK GDLEMALSQF NTVLASTPDH DAARRMVCSI LLAQRRLDEA MQEARKLLDR
NPGDANAHFL MAGVLLAGKD KRGAEKELEA GLAQEPAHVG ALLQLSTLKQ SEGRMDEALA
DLRTAVVAAP DNIIARNALY AFHLGRGETD KAEKVVLEGV NNTPQDAVLY TMLVPLYANA
GKEAKALDAV AKAHRADPAF ADAYLAGLRV HAGAGRVEQA LAESEAYLAV SPDSPGFLVA
SGALLDLLGR TTEADARFDR ALASKDRQVV LVVANRAAAT GRTDKARQVL EAALQADNQE
DLREALAVLL VRENKPDAAL ALYSSIEAQR PREALIGRYR LLTHMRRNQE AAETARTLGL
RDGGSSLPTM LEAYALERMQ QREQGIQLLD AAYRQKGSTD LLLAMGGMLE RGGDLARAEA
CYKDALKVQP DDVPTLLAMG TLQMRRKAYS KSVPVYEKAL RLAPANVVAM NNLAMAYLQQ
NGRAQMALQL ALQAYTHSPE NPEVLDTLGA CMMANGRADE ATRAYGRAVA AAPDNPTLRY
HHAEAHFKAG RKDKAAEELR VALQTPDFPE AAQARELLRK AGN
|
|---|
| |