| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0493 |
|---|
| Symbol | |
|---|
| ID | 7172380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 578804 |
|---|
| End bp | 579874 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643538993 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002434918 |
|---|
| Protein GI | 218885597 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.000408461 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACA ACACCTGCAA CTGTTCTCGC CGCCAGTGCA CCTTTTCGGG CGGGGAGCGG
CTGTGCGAAA TACTGGACCG CGCGGGCGTA CCGCACGACA GCAAGTGGCG CACACTGGTC
TTCTACATGC GCGGGCTGGG CGAGTTCAGC ACCATGAACG ACGACCAGAA GGCCCGCATC
CAGCAACTGC TGGTGGATGT GCTGCACAGG CGCGACTTCA GCGAGCAGAG CTACCACGAG
GTGCTGCGGG CAGACCGCGA CATCCGCGTG GAGCCCTACG AATGCCGCAT GCGCGAAGCC
TTGCAGGAAA CCGAACGCCT GGCCCGCGAA TTCCGCGTCA TGCTGCACCA GCGGCGGGGC
GACATGGACA AGTTGGAGCA GGACAGCGTG CGCGCCGTGG AAAGCGGCCT GGACCCCGCC
GAAGTGGTGC GCCTGCTGCG GGCCACCTTC AGTGAGGTGC GCGAACAGAT GGACAACGAC
GCCATCCGGG TGGGCGAACT GACCGTCACC GACCCGCTCA CCGGACTTGG CAACAGGCGC
GCCTTCGACA CGGCGCTGAC GGCGGGCGAG GCGGCCTGGA AGGGCGGCAC GGCGCTGGCG
CTGGTGCTGT TCGACGTGGA CCGCTTCAAG CGCATCAACG ACCAGCACGG CCATCGCATC
GGTGACCAGG TGCTGCGCAC CGTGGCCGAG GTGCTGCGCC GCAAGGTGGA CGATTGCAAC
CGCAGCCTGA ATGATGAGGC CGAGGGAGCC GGGGAATGCG CCTCTGTGGT GGCGCGCTTT
GGCGGTGAGG AATTTGCGCT GGTGCTGACG GGAGAGGGCG CGCAGCGGGC GGGCGAGATT
GCCGAGTCGG TGCGGGCCGG TCTGGAGAGC GTCAACTTTG CCATACGCGA CGGGCAGGGG
CATGTGGTGG AGCATGGCGT GCGCGTGACT CTGAGTGCAG GCGTGGCCCA TGCCAGGCCC
GGCATGCCGG AGCCGTTGAC GGACGCCTTG TTCGATTTGG CCGACAAGGC CCTGTACGAG
GCCAAGCGTG AAGGCCGCAA CCGGGTGCGG GTGGTGGCGG GCCCCATCTA G
|
|---|
| Protein sequence | MADNTCNCSR RQCTFSGGER LCEILDRAGV PHDSKWRTLV FYMRGLGEFS TMNDDQKARI
QQLLVDVLHR RDFSEQSYHE VLRADRDIRV EPYECRMREA LQETERLARE FRVMLHQRRG
DMDKLEQDSV RAVESGLDPA EVVRLLRATF SEVREQMDND AIRVGELTVT DPLTGLGNRR
AFDTALTAGE AAWKGGTALA LVLFDVDRFK RINDQHGHRI GDQVLRTVAE VLRRKVDDCN
RSLNDEAEGA GECASVVARF GGEEFALVLT GEGAQRAGEI AESVRAGLES VNFAIRDGQG
HVVEHGVRVT LSAGVAHARP GMPEPLTDAL FDLADKALYE AKREGRNRVR VVAGPI
|
|---|
| |