| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0285 |
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| Symbol | |
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| ID | 7172167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 325508 |
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| End bp | 329101 |
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| Gene Length | 3594 bp |
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| Protein Length | 1197 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643538781 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002434710 |
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| Protein GI | 218885389 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 0.493084 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATTTCG AGCAATTAAC TGCCCGGCTG GCTGCGTCCG GCCTTGCCGC ACCCGCACCC
GGCGGGAGCC ATTCCGGCGG TACCCATTCC GGCGGGGCGC ACGCCGTGGC CGAGGCCCAG
CGGATAGAGG TGGCCCGCAG CGGCATGGGC GGGGCCGCCC GCCTGGCCCT GGCCCTGATG
CGCGCCGGGC GCGACGTGGT CATGGTGGTG CGCGATGCCG CCGAACTGGC CGAGGCCCGC
GCCCTGACCA CGCTGTTCTC GCCCGAGCTT TCCGGTACGG ACCCGGCGGT GACCCAGGCC
CGCTGGGACG CCCAGTGGAT CGTCTTTCCG CAGCACCCGG CGGGCACGCG CGGGCGAGGG
GCGTGGGCCG CGCGCATGGC CAGCCTGTAC GCCCTGAGCC GCCGCGAGCA TCCGCGCGGG
ATCATCATTT CCGTGGACAA CCTGCTGCCC AAGCTGCCGC CGGTGGACAT CTTCGAGCAC
CACGAGCTGC GGCTGGCCCG GGGCGAGGAC ATGTCGCCCG AACTGGTGCT GGACCAGGCC
ATCGACTGGG GCTTCGAGCG TGCCCAGATG GTCAGCCGCC CCGGCGAGGC AGCCCGGCGC
GGCGATATCC TGGACATCTT CCCTCCCGGC TACGAAAAGC CGCTGCGCCT TGAATTCTTT
GGCGATACGC TGGAAGACAT CCGCCTGTTC GACGCCACCA GCCAGCGCTC GCTGGCCAGC
CTGGAGGAGT TCCGCCTGCT GCCCGTGGCC CCGGTGGTGG GCTGCCGCGA ATACCGCGAG
GCCGCCGCCC GCCGCTGGAA GCAGTTGCGC AAGGACGGCG TCATCGACGG CGAGCAGGCC
GCCGCCCTAG CCCGCATGGC CGAGGGCGAG GTGACCGGAC TGCTGCCCGG CGCCTGGTAC
GAAAACGCCA CCTGGATGGA AGACTGGCTG CCGCGCGATG CCGTGTGGCT GCTGCCCGAC
CGGGCCGACC TGTCCACCGC GCTGGAGGCC GCGCGCACCA ACTGGGAAGC CTTGCTGGAC
CGCCAGTACG ACGAGCACCG CCTGCGCCAG CCGCGCCCAC TCGTGCTGCG CGACGCGGAC
GAGGCGCAGG CCGCCTGGCG TGGCCGGTCC GTGGCCCATT TCGAACGGCT GGTCATGGGC
GTGGAGCGCA CCGGCGTGGA CCTGCCGGAA CGGCGGCTGC ACGCCTTCCG CGACCTGTTC
GCCGCCACCC CCTCCGTACC CGTGGACGAG GACCGCCCCT GGCAGCGGCT GGTGACGGCC
CTGCGCCAGT GGACCTCGGA ACGGCGCCAG GTGGTGCTCA GCTTCGCCAG CGACCGCAGC
CGCCGCAAGT TCCTGAAGTT GGCGGAACAG GACGGCGTGC GCCCGAACCT GCGCTATTCC
CCGGCGGACC GGGGCCTGTA CGCGCTGGTG GCGCCGTTCC GCGCGGGCAT TGACCTTGCG
TGGGACAACG TGCTGGTCAT CGGCGAGGAC GTGCTGCAAC CCAAGGCAGA CCGCCAGCCC
CGCGTGCCCA CCGGGGCCTT TCTGGGGCTG GACAAGTACG ACGACCTTTC GCCCGGCGAC
CTTCTGGTGC ACCGCGACTA CGGCGTGGGC CGCTTTGGCG GGCTGCACCG CATGGACCTT
GGCGGGGTGG CCAACGACTT TCTGCTGCTG GAATACGCGG GCGAGGACCG GCTGTACCTG
CCCGTGGACA GGCTGTCGCT CATCCAGCGG TTCAAGGGAG GGGACGATTC CGTCCCGTCG
CTGGACAAGC TGGGCGGTTC CGGCTGGCGG GCCTGCAAGG ACAAGGCCCG CAAGGCCATC
GAGAAGATCG CCGCCGACCT CGTCCAGATG TACGCCTACC GCAAGGTGGC CAAGGGCTAT
CGCTACGGCC CGCTGGGAGA ACTGTACCGC GAGTTTGAGG CGTCCTTCGG CTTCGAGGAA
ACCCCGGACC AGGCCCGGGC CATCCAGGAC GTGCTGGACG ACATGGAAAA GCCGGAACCC
ATGGACCGCC TGGTGTGCGG CGACGTGGGC TTCGGCAAGA CCGAGGTGGC CCTGCGCGCG
GCCTTCCGCG CCGCCGCCGA AGGCCGCCAG GTGGCCCTGC TGTGCCCCAC CACGGTGCTG
GCGGAACAGC ACTACCAGAC CTTCCGCAGC CGTCTGGCCG GGTTCCCGGT CAACGTGGGC
ATGCTGAGCC GCTTCGTCTC GCGGCAGAAG CAGAAGGAAG TGCTGCAAGC CGCCGCGCGC
GGGCAGATCG ACATTCTCAT CGGCACTCAC CGCCTGCTCT CCGACGACGT GCAACTGCCC
AACCTGGGCC TGCTGGTGCT GGACGAGGAG CAGCGCTTCG GCGTGCGTCA TAAGGAAAAG
CTGAAGAAGT TCCGCAAGAA CGTGGACGCC CTGACCCTGA CGGCCACGCC CATTCCGCGC
ACCTTGCAGC TGTCCATGTC GGGCATCCGC GAACTGTCGG TCATCGAGAC CGCGCCGCCG
GAACGCAAGC CCGTGGCCAC CGCGCTCATC GAGCGCGACC AGAACGCCCT GCGCCAGATT
CTGGAGCGCG AAATAGCCCG CGAAGGGCAG GTGTTCTGGG TGCACAACCG CGTGCAGGGG
CTGGAGCGGG TGGCGGAATT CGTGCGCGGG CTGGTGCCCA CGGCGCGGGT GGGCATGGCC
CACGGCCAGA TGGGCGAACG CGAGCTGGAA GACACCATGC ACAAGTTCTG GCACGGCGAG
CTTGATGTGC TGGTGTGCAC GGCCATCGTG GAATCGGGCC TGGATTTTCC GCGCGCCAAC
ACCCTCATCG TGGACCAGGC CCAGATGTTC GGGCTGGGGC AGCTGTACCA GCTGCGCGGT
CGGGTGGGGC GGTCCGACCG GCAGGCCTAC GCCGTGTTCG TGGTGTCCGA CGCCGAACGC
CTGCCCGAGC AGGCCCGCCA GCGCATGCGC ATCATCCTTG AGCTGGACTA CCTGGGCGCA
GGGTTCCAGG TGGCCATGGA AGACCTGCGG CTGCGCGGCG CCGGGAACAT CCTGGGCGAG
GTGCAGTCCG GCCACATGAC CCGCCTTGGC CTCGACCTGT ATCTGGAGAT GCTGGAAGAG
GAAGTGGCCC GGCTGAAGGG CGCCCCCCCG CGCGAGTCGG TGGAGCCGGA ACTGAACATC
GGGCTTGCCG CGCACATTCC CGAAACGTAC ATTGGCGATG CCCGCGAGCG CCTGAAGTTC
TACAAGGCCC TGTCGTCCGC GCCGGATGCC GCCACGTTGC AGGATGTGGA AATGGAACTG
CGCGACCGTT TCGGCCCCTG TCCGCCGGAG TTGCGCAACT TCCTGGCCGT GCTGGTGCTG
AAGCGCTTCC TGGCGACCTT GCAGGTGGTG CGGGCAGACA TCCATCCCGA ACGGCTGCGG
CTGGTCTGGG ACGAACGCCA GACCGTCATC GCGCCGGAAC GGCTGGTGGC ATGGGTGGCG
GCCCGGCAGG GCAAGGCGCG GCTGGTGCCC CCGTCCACGC TGGAAGTGCG CATGGAGGCC
GTGCCCGGTT CCGCCGCCGA GGCGGAAGGC GACCTTGGCG CGCGGCTGGA CGCCATCCGC
ACCGAACTGG CGGGGCTGGC TGCCGTGCCT GGTCCCGTGT CCGGCGTGCA GTAG
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| Protein sequence | MNFEQLTARL AASGLAAPAP GGSHSGGTHS GGAHAVAEAQ RIEVARSGMG GAARLALALM
RAGRDVVMVV RDAAELAEAR ALTTLFSPEL SGTDPAVTQA RWDAQWIVFP QHPAGTRGRG
AWAARMASLY ALSRREHPRG IIISVDNLLP KLPPVDIFEH HELRLARGED MSPELVLDQA
IDWGFERAQM VSRPGEAARR GDILDIFPPG YEKPLRLEFF GDTLEDIRLF DATSQRSLAS
LEEFRLLPVA PVVGCREYRE AAARRWKQLR KDGVIDGEQA AALARMAEGE VTGLLPGAWY
ENATWMEDWL PRDAVWLLPD RADLSTALEA ARTNWEALLD RQYDEHRLRQ PRPLVLRDAD
EAQAAWRGRS VAHFERLVMG VERTGVDLPE RRLHAFRDLF AATPSVPVDE DRPWQRLVTA
LRQWTSERRQ VVLSFASDRS RRKFLKLAEQ DGVRPNLRYS PADRGLYALV APFRAGIDLA
WDNVLVIGED VLQPKADRQP RVPTGAFLGL DKYDDLSPGD LLVHRDYGVG RFGGLHRMDL
GGVANDFLLL EYAGEDRLYL PVDRLSLIQR FKGGDDSVPS LDKLGGSGWR ACKDKARKAI
EKIAADLVQM YAYRKVAKGY RYGPLGELYR EFEASFGFEE TPDQARAIQD VLDDMEKPEP
MDRLVCGDVG FGKTEVALRA AFRAAAEGRQ VALLCPTTVL AEQHYQTFRS RLAGFPVNVG
MLSRFVSRQK QKEVLQAAAR GQIDILIGTH RLLSDDVQLP NLGLLVLDEE QRFGVRHKEK
LKKFRKNVDA LTLTATPIPR TLQLSMSGIR ELSVIETAPP ERKPVATALI ERDQNALRQI
LEREIAREGQ VFWVHNRVQG LERVAEFVRG LVPTARVGMA HGQMGERELE DTMHKFWHGE
LDVLVCTAIV ESGLDFPRAN TLIVDQAQMF GLGQLYQLRG RVGRSDRQAY AVFVVSDAER
LPEQARQRMR IILELDYLGA GFQVAMEDLR LRGAGNILGE VQSGHMTRLG LDLYLEMLEE
EVARLKGAPP RESVEPELNI GLAAHIPETY IGDARERLKF YKALSSAPDA ATLQDVEMEL
RDRFGPCPPE LRNFLAVLVL KRFLATLQVV RADIHPERLR LVWDERQTVI APERLVAWVA
ARQGKARLVP PSTLEVRMEA VPGSAAEAEG DLGARLDAIR TELAGLAAVP GPVSGVQ
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