| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1089 |
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| Symbol | traC |
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| ID | 7134136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 980404 |
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| End bp | 983004 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643529486 |
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| Product | type-IV secretion system protein TraC |
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| Protein accession | YP_002425561 |
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| Protein GI | 218667818 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCATAG TGCGCGATCA GTTGTTCCGT GTGATCCACA GGGCGCGGCC CCGGGATTTC
TTCCCGTGGT TGGCGGTGGA CGAAAAGAAA AAGCTGATCT TCATGGAGCG GGGGTATGTC
GGCGCGATCC TGATGTGCAA TACGCTGTAC GGAGCGGACG AATCCGTCGT GCAGGAGTTG
TCCTCCGCAC TCTCCATCGA CTTCCCGGCC GGGACGATCA TTCAGGCGGT CAACTGGAAC
GTGCCGGACT CGATGGACAT TTTGGAGCGG TTCCTGGATC GCCGGCGCGG CAACTCCGAT
GACAAAGGCC TGTCCGACCA ACAAAAAACC CTCATCAACG GTACCGCAGA GAACATTCAT
CGGTATTTCG AGGCGGCGCA GAACCGGAAT CGGGTTTTTC AGGATTCCGG CGTTCCATTG
ACGAAAAATT TGGTGTTTTT CGCCATCAAG ATTCCCGTCG CGGAGTTTCC CACGGACGAC
GAGATCGACA TGGTAGATGA GAAAATTGGG TCTTTCGCCT CCACCATCAA CATGATGTCC
CCATACCGGG TGGATCACCA TATCGCCCTG TCGCTTTGGC GACGCATGTT GCATCTGCGT
CATGAGTGGG AAGAGGAGTT TGATGAAAAC GCCTTGCTCC GGGACCAGAT CACAGGGCCC
GGGGACGCCA TCGAAGATCA CGAATCCTAT TTGAGCGTGG ATCACGGCGA TGGGGAGAAA
GACTATATTT CGGTACTTTC CATCAAGGAA TTCTCGCGTC CGATCAATAT GCTGGCCACG
AACTTCCTCA TGGGAGATCC GTTGGGGCGA GGAACCCAGT TGACCCTGCC GGCGGCACTG
GTCTGGACCA TCAATATCCC GGACCAGGTG AAAAAGCGGC GCGCCATCAC CAACGAATCC
ACCCTGATCA ACTGGCAGTC GGGGAAGCGC ATGATGTCCT GGAGTCCCAA GCTACGCCTC
AAAAAGGAAG GTATCGATTT TCTGATGGAG GCCATCAACA CTGGGGATAA TGCCCTGGAG
ATGGCCTTTA CCGCGCTGCT TTGGGGACCG GACGCGAAAA CGGTCAAGAA CGCGTCGGGA
TCGTTCATCA GCCATGCGGC CAAAGCCGGG TTCGTGATGC TGCCCGACAA GCAGATCGCC
CTGCCCATGT TCCTGAACGC CATGCCGTTG TTTCCAGATC GGGAAAGCAT GGCCATGACT
TTTCGGTACA AATCGGTGGG GACCACCCAT GCGGTGGCCG CCTGCCCGGT AATTTCCGAC
TGGCAGGGCA ACAATATGGA GGATAGTCGC CTAAGCCCCG CCTGTTCCGG CACCCTGCTG
GTGTCCAGGC GCGGTCATCT GATGGTTTTC GATATCTTCG CCTCGAACTC CGGGCACAAT
TTCGTGTTGG CCGGCATGAC CAGGTCCGGC AAGTCGGTGA CGGCGCAGCA GTTGGTCATG
GATCAGCTTT CCGTCGGCGC ACAGGTCTGG GTGATCGAGG TTGGGCGTTC TTTTGAGAAA
CTATGCAAGC TGTTTGGCGG GGATCACATC GACTTGCGGC CGGAAATGGA CGTGGGGCTC
AATCCGTTTA CGGTGGTCGG CGTGCTGGAC GACGAGATAT CCGAGTTGAC GGCCATCATC
GGCACGATGA TTTCGCCGCG TGGCGAGCTG TCCGACGAGG ACCTGTCCAC GGTGGCCATG
GCGATCCGGT CCGTATACGG CAAGGCCGGC CGCGAGGCGA CTCCAACCGA CGTGCAGGCG
TATCTGGTAG CCCAGGACAA CAACCCTCGC GCCATCGCCA TGGGCAAGAT GATGAACGAG
TTTACGCTGA ATGGAGCGCA TGGCCGCTGG TTCAATGCGC CGATGAACGT CAGCCTGAAC
GGTTCCCGTT TTGTGAATCT GGAACTCATG GAGCTGCAGC GGCGGCCGCA GGTGATGCTG
GTGGTGCTGA TGCAAATGAT GTTCGCCATC GGCAAGGAGA TTTCGAGCGC AACGGACAAG
CGCCGGCGCA TCCTTTTTGT GGATGAGGCC AGTGTATTGC TCGAAATTCA GACCGCACTG
GACTTTTTGG AAGGCTTGGC GCGGCGCGTG GCCAAGCACC AGGGGGCATT GGGGATCGGC
ATCCAGGCGC TCTCGGATCT CTACAAGAAC GAGAAAACCC GCACGATCTC CGCACAGACC
GCGCATTTTC TGGTCATGCG GCAAAATGCG GACAGCGTGG CCCAACTGGA GAACAACAAA
CAGTTCGTCA TTGGTCCATC CGGGTTGGCG ATGATGAAAA CGGTGCGCAA GACCAAGGAA
TATGCAGAGA CCTTCCTGTA CTCGGAAGAA TCCATGGCGA TAGGCCGGCT CAAGCTGGAT
CCGTATCGGC GGGTGCTGTT CGCCACCGAT GGACCCGAGA AGGAGGAGGT CGTCGAGGCC
ATGCGCAATG GGGTGGATCC AGACGCCGCG ATTCGCCAGT TTCTGGCGCA ACACCCGGAG
TTTTCGACCG GGGAGTATTC CGGTGAGATC TTGGACAGCG AAGACGCGGA AGAAGCGGAG
AAGGGGGGTA AGGAAGTGGA ATATCTGGGG GACATCGCAG GCATTGCGGA AGACGTCGAA
GAAACGAAAG GGGCTGCCTG A
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| Protein sequence | MSIVRDQLFR VIHRARPRDF FPWLAVDEKK KLIFMERGYV GAILMCNTLY GADESVVQEL
SSALSIDFPA GTIIQAVNWN VPDSMDILER FLDRRRGNSD DKGLSDQQKT LINGTAENIH
RYFEAAQNRN RVFQDSGVPL TKNLVFFAIK IPVAEFPTDD EIDMVDEKIG SFASTINMMS
PYRVDHHIAL SLWRRMLHLR HEWEEEFDEN ALLRDQITGP GDAIEDHESY LSVDHGDGEK
DYISVLSIKE FSRPINMLAT NFLMGDPLGR GTQLTLPAAL VWTINIPDQV KKRRAITNES
TLINWQSGKR MMSWSPKLRL KKEGIDFLME AINTGDNALE MAFTALLWGP DAKTVKNASG
SFISHAAKAG FVMLPDKQIA LPMFLNAMPL FPDRESMAMT FRYKSVGTTH AVAACPVISD
WQGNNMEDSR LSPACSGTLL VSRRGHLMVF DIFASNSGHN FVLAGMTRSG KSVTAQQLVM
DQLSVGAQVW VIEVGRSFEK LCKLFGGDHI DLRPEMDVGL NPFTVVGVLD DEISELTAII
GTMISPRGEL SDEDLSTVAM AIRSVYGKAG REATPTDVQA YLVAQDNNPR AIAMGKMMNE
FTLNGAHGRW FNAPMNVSLN GSRFVNLELM ELQRRPQVML VVLMQMMFAI GKEISSATDK
RRRILFVDEA SVLLEIQTAL DFLEGLARRV AKHQGALGIG IQALSDLYKN EKTRTISAQT
AHFLVMRQNA DSVAQLENNK QFVIGPSGLA MMKTVRKTKE YAETFLYSEE SMAIGRLKLD
PYRRVLFATD GPEKEEVVEA MRNGVDPDAA IRQFLAQHPE FSTGEYSGEI LDSEDAEEAE
KGGKEVEYLG DIAGIAEDVE ETKGAA
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