| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1067 |
|---|
| Symbol | |
|---|
| ID | 7136877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 959911 |
|---|
| End bp | 961590 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643529464 |
|---|
| Product | pilus assembly protein TraH, putative |
|---|
| Protein accession | YP_002425539 |
|---|
| Protein GI | 218665518 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.343455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAG CCCATCCGGA ACTAAAGAAG ATCACCAAGG GCGTACTGGT CGCCACGCTG
ACATCGGTGC TCACTTCCGG CTTTCTGAAC GCAGAAAGCC AGGCTTTGGG CATGCAGAAC
TTCGTGAACC AGATGTTCAT CGCCAGCAGC GGCGCGACCG CCGCCGGATC CGGAAACGGT
GTGACTTATT CGGGCGGTTA TTTCGAAGCT CGCACACCGC TATCCGGCGC TAACGTCATT
GCGTTCTCTC CGCCGGACAT TTCGGCCGGG TGCGGCGGCA TCAACCTGTT CTTCGGATCC
TTTCATTTTA TTAACGGCCA AGAATTTATG GCGCTGTTGC GGGAAATCGG TCAGCAAGCC
CTGGGCTATG CCTTCCAGTT GGCCATCGAC GCCATGTGCC ACCAGTGCGG CGCATTGCTT
TCGATGATTG AAAAAGATAT TCAGGACATG AATAACGCCC TTAAGAATAC CTGTCAGTTG
GCTAAGGGGA TTTTCAACGG CGATGATATG GGCGATATTG CGCAGGTGGT GAACCAGACC
CGAAGGGTGA TGTCGTCCGC TGTCGGTGAC GTGTCCGATA TTTTTAAGGG CACGGAGCCG
GCGATGTCGT CAACCATTGC CAGCGATGAA ACCAGCATCT CCACAAACTG GACAGAGCTG
ATGACTTCAG TCGGACTCAA CGGGCAAGCA GCCAAGACCC CCGTGCCGAA AACTGCACCG
CAAGCTTATA GTTTGCCCCA GTACAATATG TTCTGGAAAG CGATCAATGC GGCGGATACT
CAGGATATGC TGCTTGGACT GAGTGATACG ACTATGGTAG CCAGCGTACC GGAAGCGGTG
AGCACGACCA ACTCGAATAT TTGCGCGACG ACTACGGAAA CCACCAACGC CTGCACCAAG
GAAATTCTCA TGAGCCTGGT CGGGACGCTG ATCATCCTGC CGGGGGAATC GACCAACAGC
AGCAATGCGA GCGGCGCCGC CACGCAGAAT CAGACCAACA ATACAGCCAC CGGCAACATC
AACAGCAACA CACTGGCCTG GGGTGCATCG CTGAATTTGC AGCAACTCGT GAACGGAATA
TCAAAGGCGC CCGTTTGGCA ATGCACTTAC CGGAATATTG GCGGAACGCA TTACCAGACA
TTTGGTCCGG TCACGGGATG TATAGGACCA CTGGGTACGA CCACCCTGGG TGGTATGGGA
TATGTCGGGA TAAAAACCGC TGTGCGCGGA TATCTGTTGG GCGGATACGT GGGCGGGGTC
TATCACAATG GACTGGTCAA CGATCTGAAT ATGGGAATCA CGCCAAGCGC GGCTACACTG
GCTTTTGAGC AGGGGATGCC GTACGGCACG GCCACTATCC TGCAGGATGC GGAAACCGGA
AATCAGAACG ATCCAGGTGT TGGTTTGATG GCGCAAATCG CGAAATTGCT GGAACCCTAT
ATCGTCGATG AATTCGCCGT GAAATTCGGA GACGCGGCGC TGGATGCCGT CGGCGTATAT
AACGGACAGA ACCATATCAT CGTCCCTCCG GATTACAAGT TCTATTTGGC GGCGCTGAAT
GCGCAAATAC AGACCTACGA GACAAAAGAA TCGCTGAACG ACAAAAACGT GCGCCTGGCG
GAAGAGTTGG TGCAAAGCGC CAAGGCCAGG ATAGCCAACG CGAGCGGAGG AAAGGTCTGA
|
|---|
| Protein sequence | MQQAHPELKK ITKGVLVATL TSVLTSGFLN AESQALGMQN FVNQMFIASS GATAAGSGNG
VTYSGGYFEA RTPLSGANVI AFSPPDISAG CGGINLFFGS FHFINGQEFM ALLREIGQQA
LGYAFQLAID AMCHQCGALL SMIEKDIQDM NNALKNTCQL AKGIFNGDDM GDIAQVVNQT
RRVMSSAVGD VSDIFKGTEP AMSSTIASDE TSISTNWTEL MTSVGLNGQA AKTPVPKTAP
QAYSLPQYNM FWKAINAADT QDMLLGLSDT TMVASVPEAV STTNSNICAT TTETTNACTK
EILMSLVGTL IILPGESTNS SNASGAATQN QTNNTATGNI NSNTLAWGAS LNLQQLVNGI
SKAPVWQCTY RNIGGTHYQT FGPVTGCIGP LGTTTLGGMG YVGIKTAVRG YLLGGYVGGV
YHNGLVNDLN MGITPSAATL AFEQGMPYGT ATILQDAETG NQNDPGVGLM AQIAKLLEPY
IVDEFAVKFG DAALDAVGVY NGQNHIIVPP DYKFYLAALN AQIQTYETKE SLNDKNVRLA
EELVQSAKAR IANASGGKV
|
|---|
| |