| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_5603 |
|---|
| Symbol | |
|---|
| ID | 7119139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011758 |
|---|
| Strand | + |
|---|
| Start bp | 226844 |
|---|
| End bp | 228025 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643528267 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_002424263 |
|---|
| Protein GI | 218533448 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR02524] Dot/Icm secretion system ATPase DotB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.489222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0238979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTGGA CCGGCAAGAC CCGATACCCC GAGCAGGAGA TCGTCGTGCA CGGCCGCGAT
GAGGTGGCCC GGCTGTTCAT CCACGCCGTG TCGATCGGCG CGAGTGACGT GATCTTCCAG
TCCGGCCGCC GGGTCATGGC CGCCATCCAC GGCGAACTCA CCGCGCTGAC TGGCATCTGG
CTGCAGCCGA GCACCATGGC GCGCATCGCC ACCGAGCTGA CCTCGACCGA CTCGATCATG
TCGAAGCTCT ACGCGGCCCA GGACTTCGAC CGCGCCATCA CGATCGAGGA CCGGGCCGGG
GCTAAGCGCG ACGCCGAGCC GGTCCGGCAC CGCTTCCGCA TTAACGTCAC GGCCGGCTAC
TTCGAGGGCG ATACCGGTGT GCAGATCGTC TGCCGCCACA TCCCGGCCGA TCCGCCGACC
GTGGCCGCCC TCGGGGTCGA CGACGCTGTC GTCGCCGAGT CGACCCCGGC CCAGGGCGCC
GTGATCGTCG CCGGCGAGAC CGGTTCGGGC AAGACCACGA CGCTCGCCGC CCTGATCCGC
CGGATCCTGG AGGAGGACAC GCCGATCCAC GGGAACGTGC TGACCTACGA GGCCCCGATC
GAGTTCGTGT TCGAGACCGT GCCGTCGGGG CGCTGCACCA TCATGCAGCA CGAGATCGGC
CTGCACCTGC CCTCGTTCGC GGCCGGCGTG CGCAACTCGC TGCGGCGCAA GCCGGGCCTC
GTCATGGTGG GCGAGCTGCG CGACATGCAC ACGGTCATGG CCTGCGTCGA GGCGGCCCAG
ACCGGCCACC CGATCTACAC CACGACCCAC GCCAACGACG TCGCCCACAT CCTGCGGCGC
CTGACCCTGA TGTTCCCGGC CGACCTGCAG ATCCAGGCGT TCCACGACGT GTTGGGCAGC
AGCCACCTCC TCGTCTCGCA GCTCCTGGTG CCGCGGGTCG GCGGCGGGCG AGTCTGCCTA
CGCGAGTGGC AGGTATTGAC CGCCTCCGTC CGCCGGGAGG TGGCCCGGGC GGGCATGGCC
GAGTCCGCCG AGACCATGCG GGCGATCATC GGCCGGGGCG AGGATGGCCG TTCGATGAAG
GTGACGGTCG CGCTGGCCCT CGAGCAGGGC CTGATCGACG TCGCCACCGC CCGCCGCGTC
CTCGAGCGCT ATGGATATCG TGATGCCCGT CTCGCGGCGT AG
|
|---|
| Protein sequence | MLWTGKTRYP EQEIVVHGRD EVARLFIHAV SIGASDVIFQ SGRRVMAAIH GELTALTGIW
LQPSTMARIA TELTSTDSIM SKLYAAQDFD RAITIEDRAG AKRDAEPVRH RFRINVTAGY
FEGDTGVQIV CRHIPADPPT VAALGVDDAV VAESTPAQGA VIVAGETGSG KTTTLAALIR
RILEEDTPIH GNVLTYEAPI EFVFETVPSG RCTIMQHEIG LHLPSFAAGV RNSLRRKPGL
VMVGELRDMH TVMACVEAAQ TGHPIYTTTH ANDVAHILRR LTLMFPADLQ IQAFHDVLGS
SHLLVSQLLV PRVGGGRVCL REWQVLTASV RREVARAGMA ESAETMRAII GRGEDGRSMK
VTVALALEQG LIDVATARRV LERYGYRDAR LAA
|
|---|
| |