| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_5113 |
|---|
| Symbol | |
|---|
| ID | 7108012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | - |
|---|
| Start bp | 5677308 |
|---|
| End bp | 5678234 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643483323 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_002380332 |
|---|
| Protein GI | 218442003 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.679584 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGACA ATTTATTGAC TATGTTAGGT TTTCTCAATC TTAACAAACC CGGCGGCTGG
ACTTCTCATG ATTGTGTCGC TAAAATTCGA CGACTGTTAA AAATTAAACG GGTTGGTCAT
GGGGGAACTC TCGATCCGGC GGCCACGGGA GTTCTGCCGA TTGCGGTAGG AAAAGCCACT
CGTCTACTGC CATTTTTACC GGAAAAAAAA GCCTATCAAG CTCGTATTCG CTTAGGCGTG
ACCACAAACA CCGATGATTT GCAAGGAGAA ATCCTTCAAA TTGGGTCAGC TAATCATTTA
ACCTTAGAAC AAATTGACCC TTTATTACGT CAATTCATTG GGGAAATTGA ACAAATTCCC
CCCGCTTTTA GTGCTATTTC TCAAGGAGGA AAACGGTTAT ATGAATTAGC TCGTAAAGGA
GAATTAGTGA CCCCCCCTAG TCGTATTGTT CACGTTGAGA AAATTAACAT TTTAGATTGG
TATCCAGGAG AACACCCAGA ATTGGAACTA GAAATCATTT GTGGAGGAGG GACTTATATT
CGCTCAATTG CACGAGATTT AGGCAACTTA CTAGGGGTAG GAGGGACTTT AGCTAATTTA
ATTCGCACTC AAAGTTGTGG ACTCGAACTT AGCAAAAGTT TAACTTTAGC CGACCTGGAA
ACTCAACAAC ATCAAGGGAA TTTACCGCTC ATTTTTCCTC AACTTGCCCT TAAGCATTTG
TTAACAATCT CTTTATCTGC TCCCGAGGCT AGACGTTGGT GTCAAGGGCA ATCAATTGTT
ATAATTAATT CTATTAAATT ACCTCAATCC CAATCTGTAC AAGTTGTTGG AGAGAACGGA
GATTTTTTAG GCATCGGTGA AATAGCCACT GTAAATATTT CCGACGATAG AGAGCAAACT
TTAATTCCGA AAGTAGTATT AAGCTAG
|
|---|
| Protein sequence | MGDNLLTMLG FLNLNKPGGW TSHDCVAKIR RLLKIKRVGH GGTLDPAATG VLPIAVGKAT
RLLPFLPEKK AYQARIRLGV TTNTDDLQGE ILQIGSANHL TLEQIDPLLR QFIGEIEQIP
PAFSAISQGG KRLYELARKG ELVTPPSRIV HVEKINILDW YPGEHPELEL EIICGGGTYI
RSIARDLGNL LGVGGTLANL IRTQSCGLEL SKSLTLADLE TQQHQGNLPL IFPQLALKHL
LTISLSAPEA RRWCQGQSIV IINSIKLPQS QSVQVVGENG DFLGIGEIAT VNISDDREQT
LIPKVVLS
|
|---|
| |