Gene PCC7424_1229 details

Gene Information

• Locus tag: PCC7424_1229
• ID: 7109775
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cyanothece sp. PCC 7424
• Kingdom: Bacteria
• Replicon accession: NC_011729
• Strand: +
• Start bp: 1350961
• End bp: 1352991
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643479497
• Product: Exoribonuclease II
• Protein accession: YP_002376545
• Protein GI: 218438216
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 61
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGAAAAGG GCACACTCTC AAAGGGAAAA TTAATAGAAT TCAGACTACA AGGCGATCGT 
CGTTTAGCGG TAGTTGATCG TCCAGAAGGA AAAAAAGACT GGATCGTAAT CGATGAAGGA 
GGACAAGCGC ATAAAATACG TCCTCAACGG GTTGAATTCG AGGTAAGTGG GGGGCCTTAT 
ACCCATCAAG ATATTCCCAA TTTCCTCAAA CAAGTACAAC CCCTCGTCGA TCCATCGAGT 
TTAGAAATAG CCTGGGAATT GCTGGTAGAA GACGGAACAC CAGTCACTCC CGAAGAAATG 
GCTTTATTAT TATTTTCTGA ATCTAGTCCG GTTTTATCTT ATGCCGCCCA TAGCTTACTT 
TGTGAAGATA AAATTTATTT TAAAAACAAA GGAGAAAGTT ATGAGCCTCG TTCGGCGAAT 
CAAGTTCAAG AAATTAAACA TCAGCTAGAA GTAGAACAAC AACGTCAACG AGAAAAAGAA 
GGGTTTTATG CTCGTGTCCA AAAAGCGTTA GAGAATGAAC CCATAGACTG GTTAGATAGC 
GATCGGCCTC GTTTAGAAGC GTTAGAAAAA TTAGTGCTTC AACCCGAACA AAAAAATCAA 
GCCGCGCAGG ATCTTCTCAG TTCTTTGGGA CGCTCAACAA CTCCAGAAGC AGCATTAGAG 
TTACTTATTG AGTTAGGATG GTGGAGTCCT CACGAAAACC TGTTTCTCCG TCGAAGTTCA 
TATCCTGTCC AATTTTCCAA AAGGGTGCTT GAAGTGGCAA AACATTGTCT AGAATCTCCT 
CCTCCTGATC CAGATGTCGT CCGTCTGGAT TTAACCCATC TGAAAATTTA CACGATTGAT 
GACGAAAGTA CAAAGGAAAT TGATGACGGG TTAAGTGTTG AACAGTTAGA GAATGGAACA 
ACTCGTCTGT GGATACATAT CGCCGATCCC TCTCGTTTAG TGAGTCCGGG AGATGAATTA 
GATTTAGAAG CGAGGAAAAG AAGTACAAGT TTATATTTAC CCACCGGCAT GATTTCCATG 
TTTCCGCCGG AATTAGCCAC CGGGCCGATG AGTTTGGTAC AAGGACAAAT CTGTCCGGCT 
CTAAGTTTTG GTGTGATTTT AAAGGAAGAT GGTTCAGTCG AAGATTATAT TATTCATGCT 
AGTTTAGTTA AACCTACCTA TCGACTGACT TATGATGATG TCGATGAAAT TTTGCAACTC 
GATATTAAAG CTGAACCGGA AGTAAAAATT TTAGCTGATA GTGCGGCTCG GCGACTAGAA 
TGGCGAAAAT CTCAAGGCTC AATTAATATT TCTATGCCAG AGGCCGTGAT TAAAGTTAAA 
GAAAATGATG AGATTATCAT TGAATTACTG GAAACTTCTC GCTCTCGTCA GCTAGTGGCA 
GAAATGATGA TTTTAGCGGG GGAAGTCGCC GGTCATTACT GCCAACACCA TGAACTCCCC 
GTTCCGTTTC GGGGTCAACC TCAACCCGAA TTACCCCCAG AAGAGGAATT AATCGTTTTG 
CCAGCCGGTC CGGTGCGCTC TTGTGCCCTC CGTCGCTGTA TGCCTCGTTC TGAATTAGGG 
ACATCTCCAT CCCGTCACGC CAGTTTAGGA TTAGATGTCT ATACTCAGGT TACATCGCCT 
ATTCGTCGTT ATACCGATTT ATTAACCCAT TTTCAGCTTA AAGCTCATTT ACGGGGCGAT 
CCGTTGCCCT TTTCGGGGGA TCAAATGCAA GAGATCCTCT TTAGCGTGGC TACTTCTGCC 
TCTGAGGCGA CCTCTGTCGA ACGTCAGACT AATCGTTATT GGGGGTTAGA ATTCTTGCGG 
CGTAATGGAA ATCAAACCTG GTACGCGATT TTGTTGCGCT GGTTACGGGA AGAGGAAAAT 
TTAGGCTTAA TTTTACTCGA AGAGTTAGGA TTAGAGTTAC CTCATCGCTT TGAGCGCCCT 
TTAGCTTTGG GTGAACGGTT TGCGGTGCAA GTCACTCGTT CTGATCCTCA TCGGGATGAG 
ATTCGCTTTC GAGAAATGTT ATCCCATGAA ATTCAATCCG CAATTAGTTA A 

 

Protein sequence

MEKGTLSKGK LIEFRLQGDR RLAVVDRPEG KKDWIVIDEG GQAHKIRPQR VEFEVSGGPY 
THQDIPNFLK QVQPLVDPSS LEIAWELLVE DGTPVTPEEM ALLLFSESSP VLSYAAHSLL 
CEDKIYFKNK GESYEPRSAN QVQEIKHQLE VEQQRQREKE GFYARVQKAL ENEPIDWLDS 
DRPRLEALEK LVLQPEQKNQ AAQDLLSSLG RSTTPEAALE LLIELGWWSP HENLFLRRSS 
YPVQFSKRVL EVAKHCLESP PPDPDVVRLD LTHLKIYTID DESTKEIDDG LSVEQLENGT 
TRLWIHIADP SRLVSPGDEL DLEARKRSTS LYLPTGMISM FPPELATGPM SLVQGQICPA 
LSFGVILKED GSVEDYIIHA SLVKPTYRLT YDDVDEILQL DIKAEPEVKI LADSAARRLE 
WRKSQGSINI SMPEAVIKVK ENDEIIIELL ETSRSRQLVA EMMILAGEVA GHYCQHHELP 
VPFRGQPQPE LPPEEELIVL PAGPVRSCAL RRCMPRSELG TSPSRHASLG LDVYTQVTSP 
IRRYTDLLTH FQLKAHLRGD PLPFSGDQMQ EILFSVATSA SEATSVERQT NRYWGLEFLR 
RNGNQTWYAI LLRWLREEEN LGLILLEELG LELPHRFERP LALGERFAVQ VTRSDPHRDE 
IRFREMLSHE IQSAIS